correctHomInv: Correct homozygous inversion in StrandPhaseR VCF file.
In daewoooo/StrandPhaseR: Phase template strands from Strand-seq data
View source: R/correctInversionPhasing.R
correctHomInv R Documentation
Correct homozygous inversion in StrandPhaseR VCF file.
Description
This function takes as an input region deemed to be a homozygous inversion and flips H1 and H2 haplotypes for SNVs that
overlap with this region.
Usage
correctHomInv(correct.gr = NULL, vcf.file = NULL, ID = "")
Arguments
correct.gr
A GRanges object of homozygous inversion site to be corrected.
vcf.file
A StrandPhaseR formatted VCF file to be corrected for inversion phasing.
ID
A unique id to be appended at the end of each corrected VCF file.
Value
NULL
Author(s)
David Porubsky
daewoooo/StrandPhaseR documentation built on April 7, 2024, 7:13 p.m.
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View source: R/correctInversionPhasing.R
| correctHomInv | R Documentation |
Correct homozygous inversion in StrandPhaseR VCF file.
Description
This function takes as an input region deemed to be a homozygous inversion and flips H1 and H2 haplotypes for SNVs that overlap with this region.
Usage
correctHomInv(correct.gr = NULL, vcf.file = NULL, ID = "")
Arguments
correct.gr |
A |
vcf.file |
A StrandPhaseR formatted VCF file to be corrected for inversion phasing. |
ID |
A unique id to be appended at the end of each corrected VCF file. |
Value
NULL
Author(s)
David Porubsky
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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