|cardelino-package||Clonal Analysis of Cells Using Single Cell Data|
|cell_assign_EM||EM algorithm for assigning cells to clones and estimating...|
|cell_assign_Gibbs||Gibbs sampling the cell assignments to cloens and the...|
|get_prob_gap||Get the probability gap between the highest and the second...|
|get_prob_label||Get the clone label from the assignmnet probabilities.|
|get_snv_theta||Calculate the SNV specific allelic frequency (True postive...|
|Geweke_Z||Geweke diagnostic for MCMC sampling.|
|missing_update||Update matrix D with manully selected missing rate|
|mixBinom||EM algorithm for estimating binomial mixture model|
|plot_tree||Plot a phylogenetic tree|
|predMixBinom||Predicted probability from learned binomial mixture model|
|sim_read_count||Sythetic reads generator for genetic variants|
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