get_logLik | R Documentation |
Log likelihood of clone_id model It returns P(A, D | C, I, theta0, theta1)
get_logLik(A1, B1, Config, Assign, theta0, theta1)
A1 |
variant x cell matrix of integers; number of alternative allele reads in variant i cell j |
B1 |
variant x cell matrix of integers; number of reference allele reads in variant i cell j |
Config |
variant x clone matrix of float values. The clone-variant configuration probability, averaged by posterior samples |
Assign |
cells x clone matrix of float values. The cell-clone assignment probability, averaged by posterior samples |
theta0 |
the binomial rate for alternative allele from config = 0 |
theta1 |
the binomial rate for alternative allele from config = 1 |
logLik
, a float of log likelihood
Yuanhua Huang
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