View source: R/reads_simulator.R
donor_read_simulator | R Documentation |
Reads simulator for donor identification
donor_read_simulator( GT, D_seed, sample_variants = FALSE, donor_size = NULL, beta_shapes = NULL, n_cell = 5000, doublet_rate = NULL )
GT |
Variant-by-donor matrix for genotypes |
D_seed |
Variant-by-cell matrix for read coverage for generating depth, which be row sample and column sample both with replacement |
sample_variants |
logical(1), if TRUE, sample variants with replacement to the same size, otherwise not |
donor_size |
Vector of float for the fractions of each donor; default NULL means uniform |
beta_shapes |
A 3-by-2 matrix of beta parameters for genotypes: 0, 1, and 2; default NULL means matrix(c(0.2, 0.5, 99.8, 99.8, 0.5, 0.2), nrow = 3) |
n_cell |
An integer for number of total cells |
doublet_rate |
A float from 0 to 1 for doublet rate; default NULL means rate n_cell / 100000 |
A list of various components of the simulated dataset.
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