prob_heatmap | R Documentation |
Plot a heatmap for probability of clone assignment
prob_heatmap(prob_mat, threshold = 0.5, mode = "best", cell_idx = NULL)
prob_mat |
A matrix (M x K), the probability of cell j to clone k |
threshold |
A float value, the threshold for assignable cells |
mode |
A string, the method for defining scores for filtering cells: best and delta. best: highest probability of a cell to K clones, delta: the difference between the best and second. |
cell_idx |
A vector the indices of the input cells. If NULL, order by the probability of each clone |
a ggplot object
data(example_donor) assignments <- clone_id(A_clone, D_clone, Config = tree$Z, inference = "EM") fig <- prob_heatmap(assignments$prob)
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