Files in davismcc/cardelino
Clone Identification from Single Cell Data

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md R/assessment.R R/clone_id.R R/data_info.R R/plotting.R R/read_data.R R/reads_simulator.R R/tree_utils.R README.md
data/config_all.RData
data/example_donor.RData
data/simulation_input.RData
inst/cardelino_image_attribution.txt
inst/cardelino_med.jpg
inst/cardelino_sticker.png
inst/doc/vignette-cloneid.R inst/doc/vignette-cloneid.Rmd
inst/doc/vignette-cloneid.html
inst/extdata/canopy_results.example.rds
inst/extdata/cell_example.mpileup.vcf.gz
inst/extdata/cell_example.mpileup.vcf.gz.csi
inst/extdata/cells.donorid.vcf.gz
inst/extdata/cells.donorid.vcf.gz.csi
inst/extdata/donors.donorid.vcf.gz
inst/extdata/donors.donorid.vcf.gz.csi
man/A_clone.Rd man/A_germline.Rd man/Config_all.Rd man/D_clone.Rd man/D_germline.Rd man/D_input.Rd man/Geweke_Z.Rd man/assign_cells_to_clones.Rd man/assign_scores.Rd man/binaryPRC.Rd man/binaryROC.Rd man/cardelino-package.Rd man/clone_id.Rd man/colMatch.Rd man/devianceIC.Rd man/donor_read_simulator.Rd man/get_logLik.Rd man/get_snp_matrices.Rd man/get_tree.Rd man/heat_matrix.Rd man/heatmap.theme.Rd man/load_GT_vcf.Rd man/load_cellSNP_vcf.Rd man/mtx_to_df.Rd man/multiPRC.Rd man/plot_config_diffs.Rd man/plot_tree.Rd man/prob_heatmap.Rd man/pub.theme.Rd man/read_vcf.Rd man/rowArgmax.Rd man/rowMax.Rd man/sample_seq_depth.Rd man/sample_tree_SNV.Rd man/sim_read_count.Rd man/tree.Rd man/tree_3clone.Rd man/tree_4clone.Rd man/tree_5clone.Rd man/vc_heatmap.Rd tests/testthat.R tests/testthat/test-clone_id.R tests/testthat/test-misc.R tests/testthat/test-plotting.R tests/testthat/test-simulator.R vignettes/vignette-cloneid.Rmd
davismcc/cardelino documentation built on Aug. 21, 2019, 3:31 p.m.