plot_scatterreplicates: Intensity patterns across replicate (proteins of interest get...

In demar01/RIC: RIC (RNA interaction capture)

Description

plot_scatterreplicates generates a scatterplot for two rgiven inputs (repx &repy) and highligths the intensities of viral proteins.

Usage

plot_scatterreplicates(
  aggregated_peptides,
  protein_1,
  protein_2,
  xlimits,
  ylimits,
  col1 = "red",
  col2 = "blue",
  repx = "hour18_1",
  repy = "hour18_2"
)

Arguments

aggregated_peptides	Dataframe output from agregate_singlepeptides
protein_1	Character, Name of selected protein (1) to highlight on the plot
protein_2	Character, Name of selected protein (2) to highlight on the plot
xlimits	Integer, Sets the x-axis limits on plot.
ylimits	Integer, Sets the y-axis limits on plot.
col1	Character, Sets the color to highlight protein_1 on the plot
col2	Character, Sets the color to highlight protein_2 on the plot
repx	Character, Sets the replicate to represent on the x-axis
repy	Character, Sets the replicate to represent on the y-axis

Value

A scatter plot

Examples

if(interactive()){
plot_scatterreplicates(aggregatedWCL_batch,
xlimits=c(20,34), ylimits=c(20,34),
repx = "hour18_1",repy = "hour18_2")
}

demar01/RIC documentation built on Feb. 10, 2021, 5:25 p.m.