test_moderateRIC: Differential enrichment test
In demar01/RIC: RIC (RNA interaction capture)
Description
Usage
Arguments
Value
Examples
Description
test_moderateRIC performs a moderated t-test enrichment of the
aggregated mean intensity values for each protein for the different samples
Usage
1
2
3
4
test_moderateRIC(
aggregated_peptides,
sample_names = c("hour18", "hour4", "mock")
)
Arguments
aggregated_peptides
Dataframe
output from agregate_singlepeptides
sample_names
character,
character strimg with experiment sample name information
Value
Invisibly return a list with diff_table and diff_intensities for each
timepoint
Examples
1
2
3
4
if(interactive()){
test_moderateRIC(aggregatedWCL_batch)[[1]]$diff_hour18_hour4 -> tabletoplotWCL
test_moderateRIC(aggregatedWCL_batch)[[2]]$diff_hour18_hour4 -> intensitiestoploWCL
}
demar01/RIC documentation built on Feb. 10, 2021, 5:25 p.m.
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Description Usage Arguments Value Examples
Description
test_moderateRIC performs a moderated t-test enrichment of the
aggregated mean intensity values for each protein for the different samples
Usage
1 2 3 4 | test_moderateRIC(
aggregated_peptides,
sample_names = c("hour18", "hour4", "mock")
)
|
Arguments
aggregated_peptides |
Dataframe
output from |
sample_names |
character, character strimg with experiment sample name information |
Value
Invisibly return a list with diff_table and diff_intensities for each timepoint
Examples
1 2 3 4 | if(interactive()){
test_moderateRIC(aggregatedWCL_batch)[[1]]$diff_hour18_hour4 -> tabletoplotWCL
test_moderateRIC(aggregatedWCL_batch)[[2]]$diff_hour18_hour4 -> intensitiestoploWCL
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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