agregate_singlepeptides: Aggregate mean intensity values of peptides mapped to the...
In demar01/RIC: RIC (RNA interaction capture)

Description Usage Arguments Value Examples

View source: R/agregate_singlepeptides.R

agregate_singlepeptides calculates the mean intensity values of peptides mapped to the same gene to represent the intensity of the gene-encoded protein.

agregate_singlepeptides(
  Qfeature,
  SV_seq,
  ProtFeatures,
  whichorder,
  names_samples = paste(sample_names, rep(1:3, each = 3), sep = "_")
)

`Qfeature`	QFeatures, Data object.
`SV_seq`	AAStringSet, DNAString object.
`ProtFeatures`	list, ProtFeatures$ProtSeq us a DNAString object.
`whichorder`	numeric, to correctly reorder labels
`names_samples`	character, to specify sample names

a dataframe

if(interactive()){
aggregatedWCL<-agregate_singlepeptides(QWCLpeptidesfiltered_clean,SV_seq,
 whichorder = c(1,2,4,3,6,5,7,10,9,8),
  names_samples=   paste(sample_names,rep(1:3,each=3),sep='_'))
}