API for djw533/micro.gen.extra
Microbial genomics extensions and functions
| Global functions | |
|---|---|
| add_clades_to_tree | Man page Source code |
| collapse_tree | Man page Source code |
| create_blast_comparisons | Man page Source code |
| create_dnaseqs | Man page Source code |
| create_upset_dfs | Man page Source code |
| fasta_from_gff_list | Man page Source code |
| fasta_from_single_gff | Man page Source code |
| fasta_len_from_single_gff | Man page Source code |
| fasta_lengths_from_gff_list | Man page Source code |
| fasta_to_df | Man page Source code |
| flip_gggenes | Man page Source code |
| get_clade_nodes | Man page Source code |
| get_intersect_members | Man page |
| get_within_species_cluster_mrcas | Man page |
| gggenes_df_from_gff_dir | Man page Source code |
| gggenes_df_from_gff_file | Man page Source code |
| gggenes_df_from_gff_list | Man page Source code |
| gheatmap_with_gaps | Man page Source code |
| is.hex | Man page Source code |
| nested.test.check | Man page Source code |
| parse_interproscan_gff | Man page Source code |
| parse_snpEff_vcf | Man page Source code |
| plot_gene_accumulation_curves | Man page Source code |
| plot_genoplotR_key | Man page Source code |
| plot_genoplot_data | Man page Source code |
| plot_hamburger | Man page Source code |
| plot_intersection_on_tree | Source code |
| plot_synteny_gff_files | Man page Source code |
| plot_t6_clusters | Man page Source code |
| protein_from_sequence | Man page Source code |
| random_n_colours | Man page Source code |
| read_gff | Man page Source code |
| remove_tips_from_tree | Man page Source code |
| reverse_gff | Man page Source code |
| run_cdhit | Man page Source code |
| run_hmmsearch | Man page Source code |
| snippycore_to_df | Man page Source code |
| subsample_tree | Man page Source code |
| t6_gheatmap_with_gaps | Source code |
