README.md

In djw533/micro.gen.extra: Microbial genomics extensions and functions

Microbial genomics extensions / extra functions in R

Dependencies

• dplyr
• ggplot2
• stringr
• gplots
• RColorBrewer
• ggtree
• phytools
• ape
• castor
• purrr
• glue
• tibble
• seqinr
• genoplotR
• vegan
• UpSetR
• cowplot
• Peptides

Install dependencies

install.packages(c("dplyr", "ggplot2", "stringr", "gplots", "RColorBrewer", "phytools", "ape", "castor", "purrr", "glue", "tibble", "seqinr","genoPlotR","vegan", "UpSetR", "cowplot", "Peptides"))

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install(c("ggtree"))

Install micro.gen.extra

install.packages("devtools")
library(devtools)
install_github("djw533/micro.gen.extra")

djw533/micro.gen.extra documentation built on Nov. 8, 2024, 5:11 a.m.