subsample_tree: Subsample a phylogenetic tree
In djw533/micro.gen.extra: Microbial genomics extensions and functions
View source: R/ggtree_function_extensions.R
subsample_tree R Documentation
Subsample a phylogenetic tree
Description
Subsample a phylogenetic tree by randomly selecting one node for all clades/subtrees of a maximum tip-root distance
Usage
subsample_tree(input_tree, cut_dist, plot_clades_to_prune = F)
Arguments
input_tree
Tree object (e.g. from ape)
cut_dist
max tip-root distance to select clades to be sub-sampled
plot_clades_to_prune
plot original input tree with clades to be pruned annotated [Default = False]
Value
Pruned tree object
Examples
subsample_tree(input_tree = tree_object, cut_dist = 0.02)
djw533/micro.gen.extra documentation built on Nov. 8, 2024, 5:11 a.m.
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View source: R/ggtree_function_extensions.R
| subsample_tree | R Documentation |
Subsample a phylogenetic tree
Description
Subsample a phylogenetic tree by randomly selecting one node for all clades/subtrees of a maximum tip-root distance
Usage
subsample_tree(input_tree, cut_dist, plot_clades_to_prune = F)
Arguments
input_tree |
Tree object (e.g. from ape) |
cut_dist |
max tip-root distance to select clades to be sub-sampled |
plot_clades_to_prune |
plot original input tree with clades to be pruned annotated [Default = False] |
Value
Pruned tree object
Examples
subsample_tree(input_tree = tree_object, cut_dist = 0.02)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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