fasta_to_df: Read in sequence data and fasta header from a fasta file into...
In djw533/micro.gen.extra: Microbial genomics extensions and functions
View source: R/sequence_parsing.R
fasta_to_df R Documentation
Read in sequence data and fasta header from a fasta file into a tidy dataframe
Description
Read in sequence data and fasta header from a fasta file into a tidy dataframe.
Specify whether amino acid or DNA sequence in fasta file.
If amino acid sequences, pI and molecular weight will be calculated
Usage
fasta_to_df(fasta_file, type = "AA")
Arguments
fasta_file
Input fasta file
type
One of "DNA" or "AA" - default = "AA"
Value
Data frame with sequences and headers from a fasta file (plus molecular weight and pI if fasta file is protein sequences)
Examples
fasta_to_df("path/to/file.fasta", type = "AA")
djw533/micro.gen.extra documentation built on Nov. 8, 2024, 5:11 a.m.
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View source: R/sequence_parsing.R
| fasta_to_df | R Documentation |
Read in sequence data and fasta header from a fasta file into a tidy dataframe
Description
Read in sequence data and fasta header from a fasta file into a tidy dataframe. Specify whether amino acid or DNA sequence in fasta file. If amino acid sequences, pI and molecular weight will be calculated
Usage
fasta_to_df(fasta_file, type = "AA")
Arguments
fasta_file |
Input fasta file |
type |
One of "DNA" or "AA" - default = "AA" |
Value
Data frame with sequences and headers from a fasta file (plus molecular weight and pI if fasta file is protein sequences)
Examples
fasta_to_df("path/to/file.fasta", type = "AA")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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