fasta_len_from_single_gff: Get fasta length from single-contig gff3 file

In djw533/micro.gen.extra: Microbial genomics extensions and functions

Get fasta length from single-contig gff3 file

Description

Get fasta length rom a single-contig gff3 file and return it as a string

Usage

fasta_len_from_single_gff(gff_file, fasta_dir = ".", clean_up = TRUE)

Arguments

gff_file	Gff file
fasta_dir	Directory to put the fasta file into [Default = "."]
clean_up	TRUE/FALSE - clean up intermediate files. [Default = TRUE]

Value

fasta sequence as string

Examples

fasta_len_from_single_gff("input.gff")

djw533/micro.gen.extra documentation built on Nov. 8, 2024, 5:11 a.m.