flip_gggenes: Flip and/or centre gggenes data

In djw533/micro.gen.extra: Microbial genomics extensions and functions

Flip and/or centre gggenes data

Description

Flip and/or centre gggenes data for clearer visualisation

Usage

flip_gggenes(
  gggenes_df,
  gene_on,
  direction = 1,
  length = "use_max",
  centre = F
)

Arguments

gggenes_df	gggenes data frame (with each gene cluster as "gene cluster")
gene_on	Gene to centre on / use for direction
direction	Direction for gene_on to be in [1/-1] [default = 1] (1 for right, -1 for left)
length	Either "use_max" (use the max gene co-ordinate), or "fasta_length" -
centre	Centre genes relative to all central ("gene_on") genes for each gene cluster in the dataframe [T/F]

Value

Data frame with each gene cluster co-ordinates set on the centre_gene and re-orientated for uniformity

Examples

centre_gggenes(gggenes_df = dataframe, gene_on = "TssD", direction = -1, centre = T)

djw533/micro.gen.extra documentation built on Nov. 8, 2024, 5:11 a.m.