plot_hamburger: Plot hamburger results for each strain

In djw533/micro.gen.extra: Microbial genomics extensions and functions

Plot hamburger results for each strain

Description

Plot T6SS hamburger results for each strain

Usage

plot_hamburger(
  hamburger_dir,
  strains = "all",
  output_dir = ".",
  overwrite = F,
  format = "png",
  height = 8,
  width = 8,
  colours = "random"
)

Arguments

hamburger_dir	Hamburger output directory
strains	List of strains to plot gene clusters from
output_dir	Output directory to put image files
overwrite	TRUE/FALSE for whether to overwrite output_dir (if it already exists)
format	png/svg output, can select both - c("png","svg","both")
height	Plot height in inches - default = 8
width	Plot width in inches - default = 8
colours	Either "random" or a named vector list of colours for genes in the hmm query

Value

png/svg files of gene arrow plots for extracted gene clusters using hamburger

Examples

gggenes_df_from_gff_dir("path/to/gff/directory")

djw533/micro.gen.extra documentation built on Nov. 8, 2024, 5:11 a.m.