Files in djw533/micro.gen.extra

Microbial genomics extensions and functions

R/colours.R R/file_parsing.R R/genoplotR_extensions.R R/gggenes_extensions.R R/ggtree_function_extensions.R R/miscellaneous_functions.R R/pan_genome_extensions.R R/parse_gffs.R R/plotting_gggenes.R R/run_cdhit.R R/run_hmmsearch.R R/sequence_parsing.R README.md man/add_clades_to_tree.Rd man/collapse_tree.Rd man/create_blast_comparisons.Rd man/create_dnaseqs.Rd man/create_upset_dfs.Rd man/fasta_from_gff_list.Rd man/fasta_from_single_gff.Rd man/fasta_len_from_single_gff.Rd man/fasta_lengths_from_gff_list.Rd man/fasta_to_df.Rd man/flip_gggenes.Rd man/get_clade_nodes.Rd man/get_intersect_members.Rd man/get_within_species_cluster_mrcas.Rd man/gggenes_df_from_gff_dir.Rd man/gggenes_df_from_gff_file.Rd man/gggenes_df_from_gff_list.Rd man/gheatmap_with_gaps.Rd man/is.hex.Rd man/nested.test.check.Rd man/parse_interproscan_gff.Rd man/parse_snpEff_vcf.Rd man/plot_gene_accumulation_curves.Rd man/plot_genoplotR_key.Rd man/plot_genoplot_data.Rd man/plot_hamburger.Rd man/plot_synteny_gff_files.Rd man/plot_t6_clusters.Rd man/protein_from_sequence.Rd man/random_n_colours.Rd man/read_gff.Rd man/remove_tips_from_tree.Rd man/reverse_gff.Rd man/run_cdhit.Rd man/run_hmmsearch.Rd man/snippycore_to_df.Rd man/subsample_tree.Rd