Description Usage Arguments Value Examples
Calculates z-factor and z-prime of a measurment. Requires the actual measurment, negative and positive controls.
1 2 | calcPlateQuality2(in.dt, in.col.meas, in.col.well, in.wells.neg, in.wells.pos,
in.wells.excl = NULL, in.screen = c("activation", "inhibition"))
|
in.dt |
Input data table. Rows correspond to well measurements. Has to consist of at least 2 columns: value of the measurement in a well, and well names. |
in.col.meas |
Name of the column holding the measurement |
in.col.well |
Name of the column holding well name |
in.wells.neg |
String vector with well names of the negative control |
in.wells.pos |
String vector with well names of the positive control |
in.wells.excl |
String vector with additional (to neg and pos controls) well names to exclude from calculation of plate stats (mean, sd, etc); for example, untreated wells would typically be excluded. Default NULL |
in.screen |
String with either of |
List with two items, plate and control stats, zfactor
, and zprime
1 2 3 4 5 |
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