API for dosreislab/mcmc3r
Tools to work with MCMCtree and BPP

Global functions
.CalcCholesky	Source code
.CalcEigen	Source code
.CalcZ	Source code
.CalcZwithA	Source code
.addCorrMat	Source code
.alnPopDat	Source code
.ancrec	Source code
.availNames	Source code
.checkArr	Source code
.checkCTL	Source code
.checkCoords	Source code
.checkCorrMat	Source code
.checkData	Source code
.checkFiles	Source code
.checkInArgs	Source code
.checkInSimPop	Source code
.checkMat	Source code
.checkMethod	Source code
.checkOptArg	Source code
.checkProcSym	Source code
.checkRtraitCont	Source code
.checkTree	Source code
.coords2D.arr2mat	Source code
.coords2D.mat2arr	Source code
.coords3D.arr2mat	Source code
.coords3D.mat2arr	Source code
.gauss.quad.beta	Source code
.genArr	Source code
.genMat	Source code
.get.node.y	Source code
.get.segment.coo	Source code
.hasAges	Source code
.hasSpaces	Source code
.logL.boot	Source code
.matchNames	Source code
.mcmc2multiphylo.treef	Source code
.notNames	Source code
.outFile	Source code
.scalePopVar	Source code
.simMorphData	Source code
.simNoise	Source code
.stepping.stones.beta	Source code
.tin	Source code
.writeCTL	Source code
.writeTree	Source code
A	Man page
C	Man page
C.PS	Man page
C.arr.unal	Man page
C.mat.unal	Man page
R.sh	Man page
V	Man page
V.PS.nov1	Man page
V.arr.unal	Man page
V.mat.unal	Man page
array2matrix	Man page Source code
bayes.factors	Man page Source code
block.boot	Man page Source code
calibrations	Man page
carnivores	Man page
carnivores19x29.raw	Man page
ctlMCMCtree	Man page Source code
dB	Man page Source code
dBD	Man page Source code
dL	Man page Source code
dU	Man page Source code
gauss.quad	Man page Source code
gauss.quad.boot	Man page Source code
hominids	Man page
lmk_imp	Man page Source code
logL.boot	Man page
make.beta	Man page Source code
make.bfctlf	Man page Source code
make.ends	Source code
matrix2array	Man page Source code
mcmc.sum	Man page Source code
mcmc2anc	Man page Source code
mcmc2densitree	Man page Source code
mcmc2multiphylo	Man page Source code
microcebus	Man page
pB	Man page Source code
pL	Man page Source code
pU	Man page Source code
proc2MCMCtree	Man page Source code
qB	Man page
qL	Man page
qU	Man page Source code
sim.R	Man page
sim.morpho	Man page Source code
sim.pop	Man page Source code
sim.tree	Man page
stepping.stones	Man page Source code
stepping.stones.boot	Man page Source code
treeMCMCtree	Man page Source code
ts.array	Source code
var.foxes	Man page
vulpes21x29.raw	Man page
write.morpho	Man page Source code