microcebus: A BPP A00 MCMC sample for a mouse lemur phylogeny

In dosreislab/mcmc3r: Tools to work with MCMCtree

A BPP A00 MCMC sample for a mouse lemur phylogeny

Description

This dataset contains the results from the BPP A00 analysis of mouse lemur evolution in Madagascar from Yoder et al. (2016).

Usage

microcebus

Format

microcebus is a list with elements mcmc, a dataframe with 20,000 rows and 12 columns, and tree, an object of class phylo from the ape package.

mcmc is a posterior sample from a BPP A00 MCMC analysis containing the relative divergence times (tau's) and nucleotide diversities (theta's) for the six species mouse lemur (Microcebus spp) phylogeny.

tree contains the phylogeny with node ages given as the posterior means of the tau's in mcmc.

Source

A. D. Yoder, C. R. Campbell, M. B. Blanco, M. dos Reis, J. U. Ganzhorn, S. M. Goodman, K. E. Hunnicutt, P. A. Larsen, P. M. Kappeler, R. M. Rasoloarison, J. M. Ralison, D. L. Swofford, and D. W. Weisrock. (2016) Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar's forests past. Proc. Nat. Acad. Sci. USA., 113: 8049–8056.

See Also

hominids

dosreislab/mcmc3r documentation built on March 29, 2024, 6:45 p.m.