Man pages for dosreislab/mcmc3r
Tools to work with MCMCTree

AA matrix
array2matrixConvert an array into a matrix
bayes.factorsCalculate Bayes factors and posterior model probabilities
C29 3D landmarks from the skulls of 19 carnivoran specimens...
carnivores19x29.raw29 3D landmarks from the skulls of 19 carnivoran specimens
C.arr.unal29 3D landmarks from the skulls of 19 carnivoran specimens...
C.mat.unal29 3D landmarks from the skulls of 19 carnivoran specimens...
C.PSObject of class procSym output by Morpho after PA
ctlMCMCtreeGenerating the control file to run MCMCtree when using...
gauss.quadEstimate marginal likelihood by thermodynamic integration
lmk_impImport various landmark files for different specimens at once
make.betaMake beta values for marginal likelihood calculation
make.bfctlfPrepare mcmctree or bpp control files for marginal likelihood...
matrix2arrayConvert a matrix into an array
proc2MCMCtreeProcrustes alignment output in MCMCtree format for Bayesian...
R.shEstimated shrinkage correlation matrix
sim.morphoSimulate a continuous morphological alignment
sim.popSimulate a population matrix
sim.RCorrelation matrix for simulations
sim.treeSimulated 8-species tree
stepping.stonesEstimate marginal likelihood by stepping stones
treeMCMCtreeGenerating a tree file in MCMCtree format when using...
V29 3D landmarks from the skulls of 19 carnivoran specimens...
var.foxesVector with the population variance of Vulpes vulpes
V.arr.unal29 3D landmarks from the skulls of 21 Vulpes vulpes specimens...
V.mat.unal29 3D landmarks from the skulls of 19 carnivoran specimens...
V.PS.nov1Object of class array output by Morpho after PA
vulpes21x29.raw29 3D landmarks from the skulls of 21 Vulpes vulpes specimens
write.morphoGenerate a file with a morphological alignment for MCMCtree
dosreislab/mcmc3r documentation built on Oct. 20, 2018, 2:41 a.m.