Files in dosreislab/mcmc3r
Tools to work with MCMCtree
.gitignore
CHANGELOG.md
DESCRIPTION
LICENSE
NAMESPACE
R/A.R
R/C.PS.R
R/C.R
R/C.arr.unal.R
R/C.mat.unal.R
R/R.shrinkage.R
R/V.PS.nov1.R
R/V.R
R/V.arr.unal.R
R/V.mat.unal.R
R/calibrations.R
R/carnivores.R
R/carnivores19x29.raw.R
R/dBD.R
R/hominids.R
R/marginal-lhd.R
R/mcmc.sum.R
R/mcmc2anc.R
R/mcmc2densitree.R
R/microcebus.R
R/morpho.R
R/sim.R.R
R/sim.tree.R
R/sysdata.rda
R/var.foxes.R
R/vulpes21x29.raw.R
README.md
data-raw/A.R
data-raw/C.R
data-raw/R.shrinkage.R
data-raw/V.R
data-raw/carnivores19x29.raw.R
data-raw/sim.R.R
data-raw/sim.tree.R
data-raw/var.foxes.R
data-raw/vulpes21x29.raw.R
data/A.rda
data/C.PS.rda
data/C.arr.unal.rda
data/C.mat.unal.rda
data/C.rda
data/R.sh.rda
data/V.PS.nov1.rda
data/V.arr.unal.rda
data/V.mat.unal.rda
data/V.rda
data/carnivores.rda
data/carnivores19x29.raw.rda
data/hominids.rdata
data/microcebus.rdata
data/sim.R.rda
data/sim.tree.rda
data/var.foxes.rda
data/vulpes21x29.raw.rda
inst/extdata/19s.trees
inst/extdata/carnivores19x29.tsv
inst/extdata/seqfile.aln
inst/extdata/vulpes21x29.tsv
lyx/stepstones.lyx
man/A.Rd
man/C.PS.Rd
man/C.Rd
man/C.arr.unal.Rd
man/C.mat.unal.Rd
man/R.sh.Rd
man/V.PS.nov1.Rd
man/V.Rd
man/V.arr.unal.Rd
man/V.mat.unal.Rd
man/array2matrix.Rd
man/bayes.factors.Rd
man/block.boot.Rd
man/calibrations.Rd
man/carnivores.Rd
man/carnivores19x29.raw.Rd
man/ctlMCMCtree.Rd
man/dBD.Rd
man/gauss.quad.Rd
man/hominids.Rd
man/lmk_imp.Rd
man/logL.boot.Rd
man/make.beta.Rd
man/make.bfctlf.Rd
man/matrix2array.Rd
man/mcmc.sum.Rd
man/mcmc2anc.Rd
man/mcmc2densitree.Rd
man/microcebus.Rd
man/proc2MCMCtree.Rd
man/sim.R.Rd
man/sim.morpho.Rd
man/sim.pop.Rd
man/sim.tree.Rd
man/stepping.stones.Rd
man/treeMCMCtree.Rd
man/var.foxes.Rd
man/vulpes21x29.raw.Rd
man/write.morpho.Rd
mcmc3r.Rproj
misc/ape4s/ape4s.phy
misc/ape4s/ape4s.tree
misc/ape4s/mcmctree.ctl
misc/carnivores/carnivores.tree
misc/carnivores/mcmctree.ctl
misc/carnivores/morph_mol.aln
sandbox/sandbox.R
tests/testthat.R
tests/testthat/test-errors-chars.R
tests/testthat/test-errors-convert.R
tests/testthat/test-errors-coords.R
tests/testthat/test-errors-sim.morpho.R
tests/testthat/test-errors-write.morpho.R
vignettes/Fig1_Morpho_coords_with_Vulpes.jpeg
vignettes/Reproduce_Carnivora_analysis.Rmd
vignettes/ancrec.jpg
vignettes/densitree.jpg
vignettes/figtree.jpg
