README.md

mcmc3r

Utility functions to work with MCMCtree

Marginal likelihood calculation

The package can be used to prepare control files for marginal likelihood calculation with MCMCtree to, for example, select the relaxed-clock model. Marginal likelihood calculation can be carried out by the thermodynamic integration or stepping-stones methods. A tutorial is available here.

Working with quantitative morphological characters

The package is also useful for working with quantitative morphological characters. It can:

References

If using the package for marginal likelihood calculation please cite:

The continuous morphological models are described in:



dosreislab/mcmc3r documentation built on Oct. 20, 2018, 2:41 a.m.