MakeBarchartData: Groups taxa into top members and samples by their larger...
In eclarke/SarcoidMicrobiome: Figures for the Clarke et al sarcoid microbiome paper
Description
Groups taxa into top members and samples by their larger group (if any)
in preparation for plotting summary barcharts
Usage
1
2
MakeBarchartData(agg, sampleset, datatype, grouping.col = "SubjectID",
taxa.level = "Order", top.n = 8)
Arguments
agg
an agglomerated dataframe (eclectic::agglomerate)
taxa.level
the taxonomic rank to show in the barcharts
top.n
how many colors/levels to display
grouping.column
a column that defines larger groups of samples (optional; set to NA to omit)
eclarke/SarcoidMicrobiome documentation built on May 15, 2019, 7:53 p.m.
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Description
Groups taxa into top members and samples by their larger group (if any) in preparation for plotting summary barcharts
Usage
1 2 | MakeBarchartData(agg, sampleset, datatype, grouping.col = "SubjectID",
taxa.level = "Order", top.n = 8)
|
Arguments
agg |
an agglomerated dataframe ( |
taxa.level |
the taxonomic rank to show in the barcharts |
top.n |
how many colors/levels to display |
grouping.column |
a column that defines larger groups of samples (optional; set to NA to omit) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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