min_rank: Creates a MinRank vector from an agglomerated data frame...

In eclarke/SarcoidMicrobiome: Figures for the Clarke et al sarcoid microbiome paper

Description

Creates a MinRank vector from an agglomerated data frame (based on eclectic::tax_climber). Use inside dplyr::mutate or directly assign to col. MinRank columns are the most specific taxonomic assignments (up to a threshold)

Usage

min_rank(agg, end.rank, ranks = qiimer::taxonomic_ranks, ...)

Arguments

agg	agglomerated data frame (with taxonomic ranks)
end.rank	the most specific taxonomic rank if available
...	additional arguments passed to eclectic::tax_climber
rank	a character vector of taxonomic ranks present in agg

eclarke/SarcoidMicrobiome documentation built on May 15, 2019, 7:53 p.m.