RunDESeq2: Test differences between study groups using DESeq2.
In eclarke/SarcoidMicrobiome: Figures for the Clarke et al sarcoid microbiome paper
Description
Test differences between study groups using DESeq2.
Usage
1
RunDESeq2(ranks.to.test, agg, md, sarcoid.name = "sarcoid")
Arguments
ranks.to.test
a vector giving the taxonomic ranks to collapse and test
agg
an appropriately filtered agglomerated data frame
md
the metadata dataframe
eclarke/SarcoidMicrobiome documentation built on May 15, 2019, 7:53 p.m.
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Description
Test differences between study groups using DESeq2.
Usage
1 | RunDESeq2(ranks.to.test, agg, md, sarcoid.name = "sarcoid")
|
Arguments
ranks.to.test |
a vector giving the taxonomic ranks to collapse and test |
agg |
an appropriately filtered agglomerated data frame |
md |
the metadata dataframe |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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