RunGLMM: Test differences between study groups using the generalized...
In eclarke/SarcoidMicrobiome: Figures for the Clarke et al sarcoid microbiome paper
Description
Test differences between study groups using the generalized linear mixed model
Usage
1
2
RunGLMM(ranks.to.test, agg, md, sparsity = 0.1,
grouping.var = "OriginatingSampleID")
Arguments
ranks.to.test
a vector giving the taxonomic ranks to collapse and test
agg
an appropriately filtered agglomerated data frame
md
the metadata dataframe
sparsity
omit testing taxa that appear in fewer that this pct of samples
eclarke/SarcoidMicrobiome documentation built on May 15, 2019, 7:53 p.m.
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Description
Test differences between study groups using the generalized linear mixed model
Usage
1 2 | RunGLMM(ranks.to.test, agg, md, sparsity = 0.1,
grouping.var = "OriginatingSampleID")
|
Arguments
ranks.to.test |
a vector giving the taxonomic ranks to collapse and test |
agg |
an appropriately filtered agglomerated data frame |
md |
the metadata dataframe |
sparsity |
omit testing taxa that appear in fewer that this pct of samples |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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