Description Usage Arguments Value
Scale taxonomy summary plots (output of summarize_taxa_through_plots.py of QIIME) by biomass
1 2 3 | BatchScale(biomass_file, taxonomy_directory, OutputPrefix = "Scaled",
XAxisLabel = "Timepoint", YAxisLabel = "ug DNA per mg Fecal Pellet",
OutputDirectory = ".", batchName = "Sample", ...)
|
biomass_file |
input file that contains biomass data for each x-axis category of your summary plots |
taxonomy_directory |
path to directory that contains output of the QIIME funciton call |
OutputPrefix |
OPTIONAL: a string to append to the beginning of output files (default = 'Scaled') |
XAxisLabel |
OPTIONAL: a string to label x-axis of plots (default = 'Timepoint') |
YAxisLabel |
OPTIONAL: a string to label y-axis of plots (default = 'ug DNA per mg Fecal Pellet') |
OutputDirectory |
OPTIONAL: path to output directory (by default './') |
batchName |
OPTIONAL: string to label batch of plots (default = 'Sample') |
... |
Optional arguments |
a list that contains within it: a list of the scale taxonomy plots (at the various levels), and the scaled plots
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