Description Usage Arguments Value
Make biom tables (relative abundance and absolute abundance) from a sequencing object (individual_scale output)
1 2 | make_biom_tables(sequencing_object, output_type = "biom",
output_prefix = NULL, output_directory = getwd())
|
sequencing_object |
output from individual_scale that contains microbial density-scaled sequencing data |
output_type |
'biom' or 'phyloseq', to indicate which format to generate the resulant OTU tables in within R |
output_prefix |
(optional) prefix to give otu tables. By providing this, you will write .biom otu tables to your working directory or specified output directory |
output_directory |
(optional) specify an output directory to write otu tables in .biom format to (must provide output_prefix) |
a list of otu tables (relative and absolute) in the specified format. Additionally, if specified, .biom files will be written
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