Files in econtijoch/Biomass-Workflow
Microbial Density Data Generation and Analysis Tools
DESCRIPTION
NAMESPACE
R/.DS_Store
R/.Rapp.history
R/BatchScale.R
R/BiomassWorkflow.R
R/DataAnalysis.R
R/EJC_colors.R
R/ELISA_Analysis.R
R/Individual_Scale.R
R/OLD_DataAnalysis.R
R/OLD_ParsePlateReaderFile.R
R/OLD_StandardAnalysis.R
R/ParseMappingFile.R
R/PlateParser.R
R/Plotter.R
R/StandardAnalysis.R
R/Wet_Dry_Weight.R
R/convert_to_biom_friendly.R
R/convert_to_lefse.R
R/convert_to_phyloseq.R
R/data.R
R/dropcolumns.R
R/geom_mean_sem.R
R/get_legend.R
R/level_reorder.R
R/make_biom_tables.R
R/mass_and_order.R
R/matrix_plate_parser.R
R/onAttach.R
R/ordinate_sequencing.R
R/percent.R
R/pipe.R
R/plate_to_table.R
R/plotting_themes.R
R/qubit_merger.R
R/read_label_pairings.R
R/robot_prep_16S.R
R/robot_prep_metagenomics.R
R/sample_file_maker.R
R/scale_and_visualize.R
R/sequencing_analysis_wrapper.R
R/sequencing_data_plotter.R
R/sequencing_data_viz.R
R/sequencing_prep_16S.R
R/sequencing_prep_metagenomics.R
R/sysdata.rda
R/taxonomy_parser.R
R/well_parser.R
README.Rmd
README.md
data-raw/BR_Standard_Mapping.R
data-raw/BR_samples_raw.R
data-raw/Empty_weights.R
data-raw/Full_weights.R
data-raw/HS_Standard_Mapping.R
data-raw/HS_samples_raw.R
data-raw/Sample_info.R
data-raw/Standards_raw.R
data-raw/Tube_order.R
data-raw/mapping_file.R
data-raw/other_data.R
data/BR_samples_raw.rda
data/BR_standard_mapping.rda
data/Empty_weights.rda
data/Full_weights.rda
data/HS_samples_raw.rda
data/HS_standard_mapping.rda
data/Other_Data.rda
data/Sample_info.rda
data/Standards_raw.rda
data/Tube_order.rda
data/mapping_file.rda
inst/extdata/Sample_BR_Standards_Mapping.csv
inst/extdata/Sample_BR_raw.xls
inst/extdata/Sample_Empty_Weights.txt
inst/extdata/Sample_Full_Weights.txt
inst/extdata/Sample_HS_Standards_Mapping.csv
inst/extdata/Sample_HS_raw.xls
inst/extdata/Sample_Mapping.csv
inst/extdata/Sample_Other_Data.csv
inst/extdata/Sample_SampleInfo.csv
inst/extdata/Sample_Standards_raw.xls
inst/extdata/Sample_Tube_Order_Scanned.csv
man/BR_samples_raw.Rd
man/BR_standard_mapping.Rd
man/BatchScale.Rd
man/BiomassWorkflow.Rd
man/DataAnalysis.Rd
man/Deprecated_DataAnalysis.Rd
man/Deprecated_ParsePlateReaderFile.Rd
man/Deprecated_StandardAnalysis.Rd
man/EJC_colors.Rd
man/EJC_theme.Rd
man/EJC_theme_tilted.Rd
man/ElisaAnalysis.Rd
man/Empty_weights.Rd
man/Full_weights.Rd
man/HS_samples_raw.Rd
man/HS_standard_mapping.Rd
man/IgAAnalysis.Rd
man/Other_Data.Rd
man/ParseMappingFile.Rd
man/PlateParser.Rd
man/Sample_info.Rd
man/StandardAnalysis.Rd
man/Standards_raw.Rd
man/Tube_order.Rd
man/convert_to_biom_friendly.Rd
man/convert_to_lefse.Rd
man/convert_to_phyloseq.Rd
man/dropcolumns.Rd
man/geom_mean_sem.Rd
man/get_legend.Rd
man/ggname.Rd
man/individual_scale.Rd
man/level_reorder.Rd
man/make_biom_tables.Rd
man/mapping_file.Rd
man/mass_and_order.Rd
man/matrix_plate_parser.Rd
man/ordinate_sequencing.Rd
man/paper_theme.Rd
man/paper_theme_tilted.Rd
man/percent.Rd
man/phyla_colors.Rd
man/pipe.Rd
man/plate_to_table.Rd
man/plotter.Rd
man/predictor.Rd
man/qubit_merger.Rd
man/read_label_pairings.Rd
man/robot_prep_16S.Rd
man/robot_prep_metagenomics.Rd
man/sample_file_maker.Rd
man/scale_and_visualize.Rd
man/sequencing_analysis_wrapper.Rd
man/sequencing_data_plotter.Rd
man/sequencing_data_viz.Rd
man/sequencing_prep_16S.Rd
man/sequencing_prep_metagenomics.Rd
man/sigmoid_model.Rd
man/slides_theme.Rd
man/slides_theme_tilted.Rd
man/stat_mean_sem.Rd
man/taxonomy_parser.Rd
man/well_parser.Rd
man/wet_dry_weight.Rd
vignettes/16S_Run1/16S_Run1_Plate1_robot_file.csv
vignettes/16S_Run1/16S_Run1_Plate2_robot_file.csv
vignettes/16S_Run1/16S_Run1_Plate3_robot_file.csv
vignettes/16S_Run1/16S_Run1_Plate4_robot_file.csv
vignettes/16S_Run1/16S_Run1_Plate5_robot_file.csv
vignettes/16S_Run1/16S_Run1_sequencing_mapping.txt
vignettes/16S_Run2/16S_Run2_Plate1_robot_file.csv
vignettes/16S_Run2/16S_Run2_Plate2_robot_file.csv
vignettes/16S_Run2/16S_Run2_sequencing_mapping.txt
vignettes/Sample_BR_Standards_Mapping.csv
vignettes/Sample_BR_raw.xlsx
vignettes/Sample_Empty_Weights.txt
vignettes/Sample_Full_Weights.txt
vignettes/Sample_HS_Standards_Mapping.csv
vignettes/Sample_HS_raw.xlsx
vignettes/Sample_Mapping.csv
vignettes/Sample_Mapping_made_in_R.csv
vignettes/Sample_Other_Data.csv
vignettes/Sample_SampleInfo.csv
vignettes/Sample_Standards_raw.xlsx
vignettes/Sample_Tube_Order_Scanned.csv
vignettes/tutorial.Rmd
