Files in econtijoch/Biomass-Workflow
Microbial Density Data Generation and Analysis Tools

DESCRIPTION
NAMESPACE
R/.DS_Store
R/.Rapp.history
R/BatchScale.R R/BiomassWorkflow.R R/DataAnalysis.R R/EJC_colors.R R/ELISA_Analysis.R R/Individual_Scale.R R/OLD_DataAnalysis.R R/OLD_ParsePlateReaderFile.R R/OLD_StandardAnalysis.R R/ParseMappingFile.R R/PlateParser.R R/Plotter.R R/StandardAnalysis.R R/Wet_Dry_Weight.R R/convert_to_biom_friendly.R R/convert_to_lefse.R R/convert_to_phyloseq.R R/data.R R/dropcolumns.R R/geom_mean_sem.R R/get_legend.R R/level_reorder.R R/make_biom_tables.R R/mass_and_order.R R/matrix_plate_parser.R R/onAttach.R R/ordinate_sequencing.R R/percent.R R/pipe.R R/plate_to_table.R R/plotting_themes.R R/qubit_merger.R R/read_label_pairings.R R/robot_prep_16S.R R/robot_prep_metagenomics.R R/sample_file_maker.R R/scale_and_visualize.R R/sequencing_analysis_wrapper.R R/sequencing_data_plotter.R R/sequencing_data_viz.R R/sequencing_prep_16S.R R/sequencing_prep_metagenomics.R
R/sysdata.rda
R/taxonomy_parser.R R/well_parser.R README.Rmd README.md data-raw/BR_Standard_Mapping.R data-raw/BR_samples_raw.R data-raw/Empty_weights.R data-raw/Full_weights.R data-raw/HS_Standard_Mapping.R data-raw/HS_samples_raw.R data-raw/Sample_info.R data-raw/Standards_raw.R data-raw/Tube_order.R data-raw/mapping_file.R data-raw/other_data.R
data/BR_samples_raw.rda
data/BR_standard_mapping.rda
data/Empty_weights.rda
data/Full_weights.rda
data/HS_samples_raw.rda
data/HS_standard_mapping.rda
data/Other_Data.rda
data/Sample_info.rda
data/Standards_raw.rda
data/Tube_order.rda
data/mapping_file.rda
inst/extdata/Sample_BR_Standards_Mapping.csv
inst/extdata/Sample_BR_raw.xls
inst/extdata/Sample_Empty_Weights.txt
inst/extdata/Sample_Full_Weights.txt
inst/extdata/Sample_HS_Standards_Mapping.csv
inst/extdata/Sample_HS_raw.xls
inst/extdata/Sample_Mapping.csv
inst/extdata/Sample_Other_Data.csv
inst/extdata/Sample_SampleInfo.csv
inst/extdata/Sample_Standards_raw.xls
inst/extdata/Sample_Tube_Order_Scanned.csv
man/BR_samples_raw.Rd man/BR_standard_mapping.Rd man/BatchScale.Rd man/BiomassWorkflow.Rd man/DataAnalysis.Rd man/Deprecated_DataAnalysis.Rd man/Deprecated_ParsePlateReaderFile.Rd man/Deprecated_StandardAnalysis.Rd man/EJC_colors.Rd man/EJC_theme.Rd man/EJC_theme_tilted.Rd man/ElisaAnalysis.Rd man/Empty_weights.Rd man/Full_weights.Rd man/HS_samples_raw.Rd man/HS_standard_mapping.Rd man/IgAAnalysis.Rd man/Other_Data.Rd man/ParseMappingFile.Rd man/PlateParser.Rd man/Sample_info.Rd man/StandardAnalysis.Rd man/Standards_raw.Rd man/Tube_order.Rd man/convert_to_biom_friendly.Rd man/convert_to_lefse.Rd man/convert_to_phyloseq.Rd man/dropcolumns.Rd man/geom_mean_sem.Rd man/get_legend.Rd man/ggname.Rd man/individual_scale.Rd man/level_reorder.Rd man/make_biom_tables.Rd man/mapping_file.Rd man/mass_and_order.Rd man/matrix_plate_parser.Rd man/ordinate_sequencing.Rd man/paper_theme.Rd man/paper_theme_tilted.Rd man/percent.Rd man/phyla_colors.Rd man/pipe.Rd man/plate_to_table.Rd man/plotter.Rd man/predictor.Rd man/qubit_merger.Rd man/read_label_pairings.Rd man/robot_prep_16S.Rd man/robot_prep_metagenomics.Rd man/sample_file_maker.Rd man/scale_and_visualize.Rd man/sequencing_analysis_wrapper.Rd man/sequencing_data_plotter.Rd man/sequencing_data_viz.Rd man/sequencing_prep_16S.Rd man/sequencing_prep_metagenomics.Rd man/sigmoid_model.Rd man/slides_theme.Rd man/slides_theme_tilted.Rd man/stat_mean_sem.Rd man/taxonomy_parser.Rd man/well_parser.Rd man/wet_dry_weight.Rd
vignettes/16S_Run1/16S_Run1_Plate1_robot_file.csv
vignettes/16S_Run1/16S_Run1_Plate2_robot_file.csv
vignettes/16S_Run1/16S_Run1_Plate3_robot_file.csv
vignettes/16S_Run1/16S_Run1_Plate4_robot_file.csv
vignettes/16S_Run1/16S_Run1_Plate5_robot_file.csv
vignettes/16S_Run1/16S_Run1_sequencing_mapping.txt
vignettes/16S_Run2/16S_Run2_Plate1_robot_file.csv
vignettes/16S_Run2/16S_Run2_Plate2_robot_file.csv
vignettes/16S_Run2/16S_Run2_sequencing_mapping.txt
vignettes/Sample_BR_Standards_Mapping.csv
vignettes/Sample_BR_raw.xlsx
vignettes/Sample_Empty_Weights.txt
vignettes/Sample_Full_Weights.txt
vignettes/Sample_HS_Standards_Mapping.csv
vignettes/Sample_HS_raw.xlsx
vignettes/Sample_Mapping.csv
vignettes/Sample_Mapping_made_in_R.csv
vignettes/Sample_Other_Data.csv
vignettes/Sample_SampleInfo.csv
vignettes/Sample_Standards_raw.xlsx
vignettes/Sample_Tube_Order_Scanned.csv
vignettes/tutorial.Rmd
econtijoch/Biomass-Workflow documentation built on May 24, 2018, 7:26 p.m.