R/plotting_themes.R
In econtijoch/Biomass-Workflow: Microbial Density Data Generation and Analysis Tools
#' Theme function for plotting with tilted axes
#' @param base_size base text size
#' @param base_family base text family
#' @param bgcolor background color
#' @export
#'
EJC_theme_tilted <-function(base_size = 12,
base_family = 'sans',
base_line_size = 1,
base_rect_size = 0) {
half_line <- base_size / 2
ggplot2::theme(
line = ggplot2::element_line(colour = "black", size = base_line_size, linetype = 1, lineend = "butt"),
rect = ggplot2::element_rect(fill = NA, colour = NA, size = base_rect_size, linetype = 0),
text = ggplot2::element_text(family = base_family, face = "plain", colour = "black", size = base_size, lineheight = 0.9, hjust = 0.5, vjust = 0.5, angle = 0, margin = ggplot2::margin(t = 0, r = 0, b = 0, l = 0, unit = 'pt'), debug = FALSE),
axis.line = ggplot2::element_line(color = 'black'),
axis.line.x = NULL,
axis.line.y = NULL,
axis.text = ggplot2::element_text(size = rel(0.8), colour = "black"),
axis.text.x = ggplot2::element_text(margin = ggplot2::margin(t = 0.8 * half_line / 2), vjust = 1, hjust = 1, angle = 45),
axis.text.x.top = ggplot2::element_text(margin = ggplot2::margin(b = 0.8 * half_line / 2), vjust = 0),
axis.text.y = ggplot2::element_text(margin = ggplot2::margin(r = 0.8 * half_line / 2), hjust = 1),
axis.text.y.right = ggplot2::element_text(margin = ggplot2::margin(l = 0.8 * half_line / 2), hjust = 0),
axis.ticks = ggplot2::element_line(colour = "black"),
axis.ticks.length = unit(half_line / 2, "pt"),
axis.title.x = ggplot2::element_text(margin = ggplot2::margin(t = half_line), vjust = 1),
axis.title.x.top = ggplot2::element_text(margin = ggplot2::margin(b = half_line), vjust = 0),
axis.title.y = ggplot2::element_text(angle = 90, margin = ggplot2::margin(r = half_line), vjust = 1),
axis.title.y.right = ggplot2::element_text(angle = -90, margin = ggplot2::margin(l = half_line), vjust = 0),
legend.background = ggplot2::element_rect(colour = 'black', linetype = 'solid', size = 0.5),
legend.spacing = ggplot2::unit(0.4, "cm"),
legend.spacing.x = NULL,
legend.spacing.y = NULL,
legend.margin = ggplot2::margin(0.2, 0.2, 0.2, 0.2, "cm"),
legend.key = ggplot2::element_rect(fill = NA, colour = NA),
legend.key.size = ggplot2::unit(0.25, "cm"),
legend.key.height = NULL,
legend.key.width = NULL,
legend.text = ggplot2::element_text(size = rel(0.8)),
legend.text.align = NULL,
legend.title = ggplot2::element_text(hjust = 0),
legend.title.align = 0.5,
legend.position = "right",
legend.direction = NULL,
legend.justification = "center",
legend.box = NULL,
legend.box.margin = ggplot2::margin(1.5, 1.5, 1.5, 1.5),
legend.box.background = ggplot2::element_blank(),
legend.box.spacing = ggplot2::unit(0.4, "cm"),
panel.background = ggplot2::element_rect(fill = NA, colour = NA),
panel.border = ggplot2::element_blank(),
panel.grid = ggplot2::element_blank(),
panel.grid.minor = ggplot2::element_blank(),
panel.spacing = ggplot2::unit(half_line, "pt"),
panel.spacing.x = NULL,
panel.spacing.y = NULL,
panel.ontop = FALSE,
strip.background = ggplot2::element_rect(colour = NA, fill = NA),
strip.text = ggplot2::element_text(face = 'bold', colour = "black", size = ggplot2::rel(0.8), margin = ggplot2::margin(half_line, half_line, half_line, half_line)),
strip.text.x = NULL,
strip.text.y = ggplot2::element_text(angle = -90),
strip.placement = "outside",
strip.placement.x = NULL,
strip.placement.y = NULL,
strip.switch.pad.grid = ggplot2::unit(0.1, "cm"),
strip.switch.pad.wrap = ggplot2::unit(0.1, "cm"),
plot.background = ggplot2::element_blank(), #element_rect(colour = "white")
plot.title = ggplot2::element_text(size = ggplot2::rel(1.2), hjust = 0, vjust = 1, margin = ggplot2::margin(b = half_line * 1.2)),
plot.subtitle = ggplot2::element_text(size = ggplot2::rel(0.9), hjust = 0, vjust = 1, margin = ggplot2::margin(b = half_line * 0.9)),
plot.caption = ggplot2::element_text(size = ggplot2::rel(0.9), hjust = 1, vjust = 1, margin = ggplot2::margin(t = half_line * 0.9)),
# plot.tag = ggplot2::element_text(size = ggplot2::rel(1.3), hjust = 0.5, vjust = 0.5),
# plot.tag.position = "topleft",
plot.margin = ggplot2::margin(half_line, half_line, half_line, half_line),
complete = TRUE)
}
#' Theme function for plotting
#' @param base_size base text size
#' @param base_family base text family
#' @param bgcolor background color
#' @export
#'
EJC_theme <- function(base_size = 12,
base_family = 'sans',
base_line_size = 1,
base_rect_size = 0) {
half_line <- base_size / 2
ggplot2::theme(
line = ggplot2::element_line(colour = "black", size = base_line_size, linetype = 1, lineend = "butt"),
rect = ggplot2::element_rect(fill = NA, colour = NA, size = base_rect_size, linetype = 0),
text = ggplot2::element_text(family = base_family, face = "plain", colour = "black", size = base_size, lineheight = 0.9, hjust = 0.5, vjust = 0.5, angle = 0, margin = ggplot2::margin(t = 0, r = 0, b = 0, l = 0, unit = 'pt'), debug = FALSE),
axis.line = ggplot2::element_line(color = 'black'),
axis.line.x = NULL,
axis.line.y = NULL,
axis.text = ggplot2::element_text(size = rel(0.8), colour = "black"),
axis.text.x = ggplot2::element_text(margin = ggplot2::margin(t = 0.8 * half_line / 2), vjust = 1),
axis.text.x.top = ggplot2::element_text(margin = ggplot2::margin(b = 0.8 * half_line / 2), vjust = 0),
axis.text.y = ggplot2::element_text(margin = ggplot2::margin(r = 0.8 * half_line / 2), hjust = 1),
axis.text.y.right = ggplot2::element_text(margin = ggplot2::margin(l = 0.8 * half_line / 2), hjust = 0),
axis.ticks = ggplot2::element_line(colour = "black"),
axis.ticks.length = unit(half_line / 2, "pt"),
axis.title.x = ggplot2::element_text(margin = ggplot2::margin(t = half_line), vjust = 1),
axis.title.x.top = ggplot2::element_text(margin = ggplot2::margin(b = half_line), vjust = 0),
axis.title.y = ggplot2::element_text(angle = 90, margin = ggplot2::margin(r = half_line), vjust = 1),
axis.title.y.right = ggplot2::element_text(angle = -90, margin = ggplot2::margin(l = half_line), vjust = 0),
legend.background = ggplot2::element_rect(colour = 'black', linetype = 'solid', size = 0.5),
legend.spacing = ggplot2::unit(0.4, "cm"),
legend.spacing.x = NULL,
legend.spacing.y = NULL,
legend.margin = ggplot2::margin(0.2, 0.2, 0.2, 0.2, "cm"),
legend.key = ggplot2::element_rect(fill = NA, colour = NA),
legend.key.size = ggplot2::unit(0.25, "cm"),
legend.key.height = NULL,
legend.key.width = NULL,
legend.text = ggplot2::element_text(size = rel(0.8)),
legend.text.align = NULL,
legend.title = ggplot2::element_text(hjust = 0),
legend.title.align = 0.5,
legend.position = "right",
legend.direction = NULL,
legend.justification = "center",
legend.box = NULL,
legend.box.margin = ggplot2::margin(1.5, 1.5, 1.5, 1.5),
legend.box.background = ggplot2::element_blank(),
legend.box.spacing = ggplot2::unit(0.4, "cm"),
panel.background = ggplot2::element_rect(fill = NA, colour = NA),
panel.border = ggplot2::element_blank(),
panel.grid = ggplot2::element_blank(),
panel.grid.minor = ggplot2::element_blank(),
panel.spacing = ggplot2::unit(half_line, "pt"),
panel.spacing.x = NULL,
panel.spacing.y = NULL,
panel.ontop = FALSE,
strip.background = ggplot2::element_rect(colour = NA, fill = NA),
strip.text = ggplot2::element_text(face = 'bold', colour = "black", size = ggplot2::rel(0.8), margin = ggplot2::margin(half_line, half_line, half_line, half_line)),
strip.text.x = NULL,
strip.text.y = ggplot2::element_text(angle = -90),
strip.placement = "outside",
strip.placement.x = NULL,
strip.placement.y = NULL,
strip.switch.pad.grid = ggplot2::unit(0.1, "cm"),
strip.switch.pad.wrap = ggplot2::unit(0.1, "cm"),
plot.background = ggplot2::element_blank(), #element_rect(colour = "white")
plot.title = ggplot2::element_text(size = ggplot2::rel(1.2), hjust = 0, vjust = 1, margin = ggplot2::margin(b = half_line * 1.2)),
plot.subtitle = ggplot2::element_text(size = ggplot2::rel(0.9), hjust = 0, vjust = 1, margin = ggplot2::margin(b = half_line * 0.9)),
plot.caption = ggplot2::element_text(size = ggplot2::rel(0.9), hjust = 1, vjust = 1, margin = ggplot2::margin(t = half_line * 0.9)),
# plot.tag = ggplot2::element_text(size = ggplot2::rel(1.3), hjust = 0.5, vjust = 0.5),
# plot.tag.position = "topleft",
plot.margin = ggplot2::margin(half_line, half_line, half_line, half_line),
complete = TRUE)
}
#' Theme function for plotting paper-ready figures
#' @export
#'
paper_theme <- function(base_size = 6,
base_family = 'ArialMT',
base_line_size = 0.5,
base_rect_size = 0) {
half_line <- base_size / 2
ggplot2::theme(
line = ggplot2::element_line(colour = "black", size = base_line_size, linetype = 1, lineend = "butt"),
rect = ggplot2::element_rect(fill = NA, colour = NA, size = base_rect_size, linetype = 0),
text = ggplot2::element_text(family = base_family, face = "plain", colour = "black", size = base_size, lineheight = 0.9, hjust = 0.5, vjust = 0.5, angle = 0, margin = ggplot2::margin(t = 0, r = 0, b = 0, l = 0, unit = 'pt'), debug = FALSE),
axis.line = ggplot2::element_line(color = 'black'),
axis.line.x = NULL,
axis.line.y = NULL,
axis.text = ggplot2::element_text(size = rel(0.8), colour = "black"),
axis.text.x = ggplot2::element_text(margin = ggplot2::margin(t = 0.8 * half_line / 2), vjust = 1),
axis.text.x.top = ggplot2::element_text(margin = ggplot2::margin(b = 0.8 * half_line / 2), vjust = 0),
axis.text.y = ggplot2::element_text(margin = ggplot2::margin(r = 0.8 * half_line / 2), hjust = 1),
axis.text.y.right = ggplot2::element_text(margin = ggplot2::margin(l = 0.8 * half_line / 2), hjust = 0),
axis.ticks = ggplot2::element_line(colour = "black"),
axis.ticks.length = unit(half_line / 2, "pt"),
axis.title.x = ggplot2::element_text(margin = ggplot2::margin(t = half_line), vjust = 1),
axis.title.x.top = ggplot2::element_text(margin = ggplot2::margin(b = half_line), vjust = 0),
axis.title.y = ggplot2::element_text(angle = 90, margin = ggplot2::margin(r = half_line), vjust = 1),
axis.title.y.right = ggplot2::element_text(angle = -90, margin = ggplot2::margin(l = half_line), vjust = 0),
legend.background = ggplot2::element_rect(colour = 'black', linetype = 'solid', size = 0.5),
legend.spacing = ggplot2::unit(0.4, "cm"),
legend.spacing.x = NULL,
legend.spacing.y = NULL,
legend.margin = ggplot2::margin(0.2, 0.2, 0.2, 0.2, "cm"),
legend.key = ggplot2::element_rect(fill = NA, colour = NA),
legend.key.size = ggplot2::unit(0.25, "cm"),
legend.key.height = NULL,
legend.key.width = NULL,
legend.text = ggplot2::element_text(size = rel(0.8)),
legend.text.align = NULL,
legend.title = ggplot2::element_text(hjust = 0),
legend.title.align = 0.5,
legend.position = "right",
legend.direction = NULL,
legend.justification = "center",
legend.box = NULL,
legend.box.margin = ggplot2::margin(1.5, 1.5, 1.5, 1.5),
legend.box.background = ggplot2::element_blank(),
legend.box.spacing = ggplot2::unit(0.4, "cm"),
panel.background = ggplot2::element_rect(fill = NA, colour = NA),
panel.border = ggplot2::element_blank(),
panel.grid = ggplot2::element_blank(),
panel.grid.minor = ggplot2::element_blank(),
panel.spacing = ggplot2::unit(half_line, "pt"),
panel.spacing.x = NULL,
panel.spacing.y = NULL,
panel.ontop = FALSE,
strip.background = ggplot2::element_rect(colour = NA, fill = NA),
strip.text = ggplot2::element_text(face = 'bold', colour = "black", size = ggplot2::rel(0.8), margin = ggplot2::margin(half_line, half_line, half_line, half_line)),
strip.text.x = NULL,
strip.text.y = ggplot2::element_text(angle = -90),
strip.placement = "outside",
strip.placement.x = NULL,
strip.placement.y = NULL,
strip.switch.pad.grid = ggplot2::unit(0.1, "cm"),
strip.switch.pad.wrap = ggplot2::unit(0.1, "cm"),
plot.background = ggplot2::element_blank(), #element_rect(colour = "white")
plot.title = ggplot2::element_text(size = ggplot2::rel(1.2), hjust = 0, vjust = 1, margin = ggplot2::margin(b = half_line * 1.2)),
plot.subtitle = ggplot2::element_text(size = ggplot2::rel(0.9), hjust = 0, vjust = 1, margin = ggplot2::margin(b = half_line * 0.9)),
plot.caption = ggplot2::element_text(size = ggplot2::rel(0.9), hjust = 1, vjust = 1, margin = ggplot2::margin(t = half_line * 0.9)),
# plot.tag = ggplot2::element_text(size = ggplot2::rel(1.3), hjust = 0.5, vjust = 0.5),
# plot.tag.position = "topleft",
plot.margin = ggplot2::margin(half_line, half_line, half_line, half_line),
complete = TRUE)
}
#' Theme function for plotting paper-ready figures with tilted axes
#' @export
#'
paper_theme_tilted <-function(base_size = 6,
base_family = 'ArialMT',
base_line_size = 1,
base_rect_size = 0) {
half_line <- base_size / 2
ggplot2::theme(
line = ggplot2::element_line(colour = "black", size = 0.5, linetype = 1, lineend = "butt"),
rect = ggplot2::element_rect(fill = NA, colour = NA, size = base_rect_size, linetype = 0),
text = ggplot2::element_text(family = base_family, face = "plain", colour = "black", size = base_size, lineheight = 0.9, hjust = 0.5, vjust = 0.5, angle = 0, margin = ggplot2::margin(t = 0, r = 0, b = 0, l = 0, unit = 'pt'), debug = FALSE),
axis.line = ggplot2::element_line(color = 'black'),
axis.line.x = NULL,
axis.line.y = NULL,
axis.text = ggplot2::element_text(size = rel(0.8), colour = "black"),
axis.text.x = ggplot2::element_text(margin = ggplot2::margin(t = 0.8 * half_line / 2), vjust = 1, angle = 45, hjust = 1),
axis.text.x.top = ggplot2::element_text(margin = ggplot2::margin(b = 0.8 * half_line / 2), vjust = 0),
axis.text.y = ggplot2::element_text(margin = ggplot2::margin(r = 0.8 * half_line / 2), hjust = 1),
axis.text.y.right = ggplot2::element_text(margin = ggplot2::margin(l = 0.8 * half_line / 2), hjust = 0),
axis.ticks = ggplot2::element_line(colour = "black"),
axis.ticks.length = unit(half_line / 2, "pt"),
axis.title.x = ggplot2::element_text(margin = ggplot2::margin(t = half_line), vjust = 1),
axis.title.x.top = ggplot2::element_text(margin = ggplot2::margin(b = half_line), vjust = 0),
axis.title.y = ggplot2::element_text(angle = 90, margin = ggplot2::margin(r = half_line), vjust = 1),
axis.title.y.right = ggplot2::element_text(angle = -90, margin = ggplot2::margin(l = half_line), vjust = 0),
legend.background = ggplot2::element_rect(colour = 'black', linetype = 'solid', size = 0.5),
legend.spacing = ggplot2::unit(0.4, "cm"),
legend.spacing.x = NULL,
legend.spacing.y = NULL,
legend.margin = ggplot2::margin(0.2, 0.2, 0.2, 0.2, "cm"),
legend.key = ggplot2::element_rect(fill = "grey95", colour = "white"),
legend.key.size = ggplot2::unit(0.25, "cm"),
legend.key.height = NULL,
legend.key.width = NULL,
legend.text = ggplot2::element_text(size = rel(0.8)),
legend.text.align = NULL,
legend.title = ggplot2::element_text(hjust = 0),
legend.title.align = 0.5,
legend.position = "right",
legend.direction = NULL,
legend.justification = "center",
legend.box = NULL,
legend.box.margin = ggplot2::margin(1.5, 1.5, 1.5, 1.5),
legend.box.background = ggplot2::element_blank(),
legend.box.spacing = ggplot2::unit(0.4, "cm"),
panel.background = ggplot2::element_rect(fill = NA, colour = NA),
panel.border = ggplot2::element_blank(),
panel.grid = ggplot2::element_blank(),
panel.grid.minor = ggplot2::element_blank(),
panel.spacing = ggplot2::unit(half_line, "pt"),
panel.spacing.x = NULL,
panel.spacing.y = NULL,
panel.ontop = FALSE,
strip.background = ggplot2::element_rect(colour = NA, fill = NA),
strip.text = ggplot2::element_text(face = 'bold', colour = "black", size = ggplot2::rel(0.8), margin = ggplot2::margin(half_line, half_line, half_line, half_line)),
strip.text.x = NULL,
strip.text.y = ggplot2::element_text(angle = -90),
strip.placement = "outside",
strip.placement.x = NULL,
strip.placement.y = NULL,
strip.switch.pad.grid = ggplot2::unit(0.1, "cm"),
strip.switch.pad.wrap = ggplot2::unit(0.1, "cm"),
plot.background = ggplot2::element_blank(), #element_rect(colour = "white")
plot.title = ggplot2::element_text(size = ggplot2::rel(1.2), hjust = 0, vjust = 1, margin = ggplot2::margin(b = half_line * 1.2)),
plot.subtitle = ggplot2::element_text(size = ggplot2::rel(0.9), hjust = 0, vjust = 1, margin = ggplot2::margin(b = half_line * 0.9)),
plot.caption = ggplot2::element_text(size = ggplot2::rel(0.9), hjust = 1, vjust = 1, margin = ggplot2::margin(t = half_line * 0.9)),
# plot.tag = ggplot2::element_text(size = ggplot2::rel(1.3), hjust = 0.5, vjust = 0.5),
# plot.tag.position = "topleft",
plot.margin = ggplot2::margin(half_line, half_line, half_line, half_line),
complete = TRUE)
}
#' Theme function for plotting presentation-ready figures
#' @export
#'
slides_theme <- function() {
paper_theme(base_size = 24, base_line_size = 1.5)
}
#' Theme function for plotting presentation-ready figures with tilted axes
#' @export
#'
slides_theme_tilted <- function() {
paper_theme_tilted(base_size = 24, base_line_size = 1.5)
}
econtijoch/Biomass-Workflow documentation built on May 15, 2019, 7:59 p.m.
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#' Theme function for plotting with tilted axes
#' @param base_size base text size
#' @param base_family base text family
#' @param bgcolor background color
#' @export
#'
EJC_theme_tilted <-function(base_size = 12,
base_family = 'sans',
base_line_size = 1,
base_rect_size = 0) {
half_line <- base_size / 2
ggplot2::theme(
line = ggplot2::element_line(colour = "black", size = base_line_size, linetype = 1, lineend = "butt"),
rect = ggplot2::element_rect(fill = NA, colour = NA, size = base_rect_size, linetype = 0),
text = ggplot2::element_text(family = base_family, face = "plain", colour = "black", size = base_size, lineheight = 0.9, hjust = 0.5, vjust = 0.5, angle = 0, margin = ggplot2::margin(t = 0, r = 0, b = 0, l = 0, unit = 'pt'), debug = FALSE),
axis.line = ggplot2::element_line(color = 'black'),
axis.line.x = NULL,
axis.line.y = NULL,
axis.text = ggplot2::element_text(size = rel(0.8), colour = "black"),
axis.text.x = ggplot2::element_text(margin = ggplot2::margin(t = 0.8 * half_line / 2), vjust = 1, hjust = 1, angle = 45),
axis.text.x.top = ggplot2::element_text(margin = ggplot2::margin(b = 0.8 * half_line / 2), vjust = 0),
axis.text.y = ggplot2::element_text(margin = ggplot2::margin(r = 0.8 * half_line / 2), hjust = 1),
axis.text.y.right = ggplot2::element_text(margin = ggplot2::margin(l = 0.8 * half_line / 2), hjust = 0),
axis.ticks = ggplot2::element_line(colour = "black"),
axis.ticks.length = unit(half_line / 2, "pt"),
axis.title.x = ggplot2::element_text(margin = ggplot2::margin(t = half_line), vjust = 1),
axis.title.x.top = ggplot2::element_text(margin = ggplot2::margin(b = half_line), vjust = 0),
axis.title.y = ggplot2::element_text(angle = 90, margin = ggplot2::margin(r = half_line), vjust = 1),
axis.title.y.right = ggplot2::element_text(angle = -90, margin = ggplot2::margin(l = half_line), vjust = 0),
legend.background = ggplot2::element_rect(colour = 'black', linetype = 'solid', size = 0.5),
legend.spacing = ggplot2::unit(0.4, "cm"),
legend.spacing.x = NULL,
legend.spacing.y = NULL,
legend.margin = ggplot2::margin(0.2, 0.2, 0.2, 0.2, "cm"),
legend.key = ggplot2::element_rect(fill = NA, colour = NA),
legend.key.size = ggplot2::unit(0.25, "cm"),
legend.key.height = NULL,
legend.key.width = NULL,
legend.text = ggplot2::element_text(size = rel(0.8)),
legend.text.align = NULL,
legend.title = ggplot2::element_text(hjust = 0),
legend.title.align = 0.5,
legend.position = "right",
legend.direction = NULL,
legend.justification = "center",
legend.box = NULL,
legend.box.margin = ggplot2::margin(1.5, 1.5, 1.5, 1.5),
legend.box.background = ggplot2::element_blank(),
legend.box.spacing = ggplot2::unit(0.4, "cm"),
panel.background = ggplot2::element_rect(fill = NA, colour = NA),
panel.border = ggplot2::element_blank(),
panel.grid = ggplot2::element_blank(),
panel.grid.minor = ggplot2::element_blank(),
panel.spacing = ggplot2::unit(half_line, "pt"),
panel.spacing.x = NULL,
panel.spacing.y = NULL,
panel.ontop = FALSE,
strip.background = ggplot2::element_rect(colour = NA, fill = NA),
strip.text = ggplot2::element_text(face = 'bold', colour = "black", size = ggplot2::rel(0.8), margin = ggplot2::margin(half_line, half_line, half_line, half_line)),
strip.text.x = NULL,
strip.text.y = ggplot2::element_text(angle = -90),
strip.placement = "outside",
strip.placement.x = NULL,
strip.placement.y = NULL,
strip.switch.pad.grid = ggplot2::unit(0.1, "cm"),
strip.switch.pad.wrap = ggplot2::unit(0.1, "cm"),
plot.background = ggplot2::element_blank(), #element_rect(colour = "white")
plot.title = ggplot2::element_text(size = ggplot2::rel(1.2), hjust = 0, vjust = 1, margin = ggplot2::margin(b = half_line * 1.2)),
plot.subtitle = ggplot2::element_text(size = ggplot2::rel(0.9), hjust = 0, vjust = 1, margin = ggplot2::margin(b = half_line * 0.9)),
plot.caption = ggplot2::element_text(size = ggplot2::rel(0.9), hjust = 1, vjust = 1, margin = ggplot2::margin(t = half_line * 0.9)),
# plot.tag = ggplot2::element_text(size = ggplot2::rel(1.3), hjust = 0.5, vjust = 0.5),
# plot.tag.position = "topleft",
plot.margin = ggplot2::margin(half_line, half_line, half_line, half_line),
complete = TRUE)
}
#' Theme function for plotting
#' @param base_size base text size
#' @param base_family base text family
#' @param bgcolor background color
#' @export
#'
EJC_theme <- function(base_size = 12,
base_family = 'sans',
base_line_size = 1,
base_rect_size = 0) {
half_line <- base_size / 2
ggplot2::theme(
line = ggplot2::element_line(colour = "black", size = base_line_size, linetype = 1, lineend = "butt"),
rect = ggplot2::element_rect(fill = NA, colour = NA, size = base_rect_size, linetype = 0),
text = ggplot2::element_text(family = base_family, face = "plain", colour = "black", size = base_size, lineheight = 0.9, hjust = 0.5, vjust = 0.5, angle = 0, margin = ggplot2::margin(t = 0, r = 0, b = 0, l = 0, unit = 'pt'), debug = FALSE),
axis.line = ggplot2::element_line(color = 'black'),
axis.line.x = NULL,
axis.line.y = NULL,
axis.text = ggplot2::element_text(size = rel(0.8), colour = "black"),
axis.text.x = ggplot2::element_text(margin = ggplot2::margin(t = 0.8 * half_line / 2), vjust = 1),
axis.text.x.top = ggplot2::element_text(margin = ggplot2::margin(b = 0.8 * half_line / 2), vjust = 0),
axis.text.y = ggplot2::element_text(margin = ggplot2::margin(r = 0.8 * half_line / 2), hjust = 1),
axis.text.y.right = ggplot2::element_text(margin = ggplot2::margin(l = 0.8 * half_line / 2), hjust = 0),
axis.ticks = ggplot2::element_line(colour = "black"),
axis.ticks.length = unit(half_line / 2, "pt"),
axis.title.x = ggplot2::element_text(margin = ggplot2::margin(t = half_line), vjust = 1),
axis.title.x.top = ggplot2::element_text(margin = ggplot2::margin(b = half_line), vjust = 0),
axis.title.y = ggplot2::element_text(angle = 90, margin = ggplot2::margin(r = half_line), vjust = 1),
axis.title.y.right = ggplot2::element_text(angle = -90, margin = ggplot2::margin(l = half_line), vjust = 0),
legend.background = ggplot2::element_rect(colour = 'black', linetype = 'solid', size = 0.5),
legend.spacing = ggplot2::unit(0.4, "cm"),
legend.spacing.x = NULL,
legend.spacing.y = NULL,
legend.margin = ggplot2::margin(0.2, 0.2, 0.2, 0.2, "cm"),
legend.key = ggplot2::element_rect(fill = NA, colour = NA),
legend.key.size = ggplot2::unit(0.25, "cm"),
legend.key.height = NULL,
legend.key.width = NULL,
legend.text = ggplot2::element_text(size = rel(0.8)),
legend.text.align = NULL,
legend.title = ggplot2::element_text(hjust = 0),
legend.title.align = 0.5,
legend.position = "right",
legend.direction = NULL,
legend.justification = "center",
legend.box = NULL,
legend.box.margin = ggplot2::margin(1.5, 1.5, 1.5, 1.5),
legend.box.background = ggplot2::element_blank(),
legend.box.spacing = ggplot2::unit(0.4, "cm"),
panel.background = ggplot2::element_rect(fill = NA, colour = NA),
panel.border = ggplot2::element_blank(),
panel.grid = ggplot2::element_blank(),
panel.grid.minor = ggplot2::element_blank(),
panel.spacing = ggplot2::unit(half_line, "pt"),
panel.spacing.x = NULL,
panel.spacing.y = NULL,
panel.ontop = FALSE,
strip.background = ggplot2::element_rect(colour = NA, fill = NA),
strip.text = ggplot2::element_text(face = 'bold', colour = "black", size = ggplot2::rel(0.8), margin = ggplot2::margin(half_line, half_line, half_line, half_line)),
strip.text.x = NULL,
strip.text.y = ggplot2::element_text(angle = -90),
strip.placement = "outside",
strip.placement.x = NULL,
strip.placement.y = NULL,
strip.switch.pad.grid = ggplot2::unit(0.1, "cm"),
strip.switch.pad.wrap = ggplot2::unit(0.1, "cm"),
plot.background = ggplot2::element_blank(), #element_rect(colour = "white")
plot.title = ggplot2::element_text(size = ggplot2::rel(1.2), hjust = 0, vjust = 1, margin = ggplot2::margin(b = half_line * 1.2)),
plot.subtitle = ggplot2::element_text(size = ggplot2::rel(0.9), hjust = 0, vjust = 1, margin = ggplot2::margin(b = half_line * 0.9)),
plot.caption = ggplot2::element_text(size = ggplot2::rel(0.9), hjust = 1, vjust = 1, margin = ggplot2::margin(t = half_line * 0.9)),
# plot.tag = ggplot2::element_text(size = ggplot2::rel(1.3), hjust = 0.5, vjust = 0.5),
# plot.tag.position = "topleft",
plot.margin = ggplot2::margin(half_line, half_line, half_line, half_line),
complete = TRUE)
}
#' Theme function for plotting paper-ready figures
#' @export
#'
paper_theme <- function(base_size = 6,
base_family = 'ArialMT',
base_line_size = 0.5,
base_rect_size = 0) {
half_line <- base_size / 2
ggplot2::theme(
line = ggplot2::element_line(colour = "black", size = base_line_size, linetype = 1, lineend = "butt"),
rect = ggplot2::element_rect(fill = NA, colour = NA, size = base_rect_size, linetype = 0),
text = ggplot2::element_text(family = base_family, face = "plain", colour = "black", size = base_size, lineheight = 0.9, hjust = 0.5, vjust = 0.5, angle = 0, margin = ggplot2::margin(t = 0, r = 0, b = 0, l = 0, unit = 'pt'), debug = FALSE),
axis.line = ggplot2::element_line(color = 'black'),
axis.line.x = NULL,
axis.line.y = NULL,
axis.text = ggplot2::element_text(size = rel(0.8), colour = "black"),
axis.text.x = ggplot2::element_text(margin = ggplot2::margin(t = 0.8 * half_line / 2), vjust = 1),
axis.text.x.top = ggplot2::element_text(margin = ggplot2::margin(b = 0.8 * half_line / 2), vjust = 0),
axis.text.y = ggplot2::element_text(margin = ggplot2::margin(r = 0.8 * half_line / 2), hjust = 1),
axis.text.y.right = ggplot2::element_text(margin = ggplot2::margin(l = 0.8 * half_line / 2), hjust = 0),
axis.ticks = ggplot2::element_line(colour = "black"),
axis.ticks.length = unit(half_line / 2, "pt"),
axis.title.x = ggplot2::element_text(margin = ggplot2::margin(t = half_line), vjust = 1),
axis.title.x.top = ggplot2::element_text(margin = ggplot2::margin(b = half_line), vjust = 0),
axis.title.y = ggplot2::element_text(angle = 90, margin = ggplot2::margin(r = half_line), vjust = 1),
axis.title.y.right = ggplot2::element_text(angle = -90, margin = ggplot2::margin(l = half_line), vjust = 0),
legend.background = ggplot2::element_rect(colour = 'black', linetype = 'solid', size = 0.5),
legend.spacing = ggplot2::unit(0.4, "cm"),
legend.spacing.x = NULL,
legend.spacing.y = NULL,
legend.margin = ggplot2::margin(0.2, 0.2, 0.2, 0.2, "cm"),
legend.key = ggplot2::element_rect(fill = NA, colour = NA),
legend.key.size = ggplot2::unit(0.25, "cm"),
legend.key.height = NULL,
legend.key.width = NULL,
legend.text = ggplot2::element_text(size = rel(0.8)),
legend.text.align = NULL,
legend.title = ggplot2::element_text(hjust = 0),
legend.title.align = 0.5,
legend.position = "right",
legend.direction = NULL,
legend.justification = "center",
legend.box = NULL,
legend.box.margin = ggplot2::margin(1.5, 1.5, 1.5, 1.5),
legend.box.background = ggplot2::element_blank(),
legend.box.spacing = ggplot2::unit(0.4, "cm"),
panel.background = ggplot2::element_rect(fill = NA, colour = NA),
panel.border = ggplot2::element_blank(),
panel.grid = ggplot2::element_blank(),
panel.grid.minor = ggplot2::element_blank(),
panel.spacing = ggplot2::unit(half_line, "pt"),
panel.spacing.x = NULL,
panel.spacing.y = NULL,
panel.ontop = FALSE,
strip.background = ggplot2::element_rect(colour = NA, fill = NA),
strip.text = ggplot2::element_text(face = 'bold', colour = "black", size = ggplot2::rel(0.8), margin = ggplot2::margin(half_line, half_line, half_line, half_line)),
strip.text.x = NULL,
strip.text.y = ggplot2::element_text(angle = -90),
strip.placement = "outside",
strip.placement.x = NULL,
strip.placement.y = NULL,
strip.switch.pad.grid = ggplot2::unit(0.1, "cm"),
strip.switch.pad.wrap = ggplot2::unit(0.1, "cm"),
plot.background = ggplot2::element_blank(), #element_rect(colour = "white")
plot.title = ggplot2::element_text(size = ggplot2::rel(1.2), hjust = 0, vjust = 1, margin = ggplot2::margin(b = half_line * 1.2)),
plot.subtitle = ggplot2::element_text(size = ggplot2::rel(0.9), hjust = 0, vjust = 1, margin = ggplot2::margin(b = half_line * 0.9)),
plot.caption = ggplot2::element_text(size = ggplot2::rel(0.9), hjust = 1, vjust = 1, margin = ggplot2::margin(t = half_line * 0.9)),
# plot.tag = ggplot2::element_text(size = ggplot2::rel(1.3), hjust = 0.5, vjust = 0.5),
# plot.tag.position = "topleft",
plot.margin = ggplot2::margin(half_line, half_line, half_line, half_line),
complete = TRUE)
}
#' Theme function for plotting paper-ready figures with tilted axes
#' @export
#'
paper_theme_tilted <-function(base_size = 6,
base_family = 'ArialMT',
base_line_size = 1,
base_rect_size = 0) {
half_line <- base_size / 2
ggplot2::theme(
line = ggplot2::element_line(colour = "black", size = 0.5, linetype = 1, lineend = "butt"),
rect = ggplot2::element_rect(fill = NA, colour = NA, size = base_rect_size, linetype = 0),
text = ggplot2::element_text(family = base_family, face = "plain", colour = "black", size = base_size, lineheight = 0.9, hjust = 0.5, vjust = 0.5, angle = 0, margin = ggplot2::margin(t = 0, r = 0, b = 0, l = 0, unit = 'pt'), debug = FALSE),
axis.line = ggplot2::element_line(color = 'black'),
axis.line.x = NULL,
axis.line.y = NULL,
axis.text = ggplot2::element_text(size = rel(0.8), colour = "black"),
axis.text.x = ggplot2::element_text(margin = ggplot2::margin(t = 0.8 * half_line / 2), vjust = 1, angle = 45, hjust = 1),
axis.text.x.top = ggplot2::element_text(margin = ggplot2::margin(b = 0.8 * half_line / 2), vjust = 0),
axis.text.y = ggplot2::element_text(margin = ggplot2::margin(r = 0.8 * half_line / 2), hjust = 1),
axis.text.y.right = ggplot2::element_text(margin = ggplot2::margin(l = 0.8 * half_line / 2), hjust = 0),
axis.ticks = ggplot2::element_line(colour = "black"),
axis.ticks.length = unit(half_line / 2, "pt"),
axis.title.x = ggplot2::element_text(margin = ggplot2::margin(t = half_line), vjust = 1),
axis.title.x.top = ggplot2::element_text(margin = ggplot2::margin(b = half_line), vjust = 0),
axis.title.y = ggplot2::element_text(angle = 90, margin = ggplot2::margin(r = half_line), vjust = 1),
axis.title.y.right = ggplot2::element_text(angle = -90, margin = ggplot2::margin(l = half_line), vjust = 0),
legend.background = ggplot2::element_rect(colour = 'black', linetype = 'solid', size = 0.5),
legend.spacing = ggplot2::unit(0.4, "cm"),
legend.spacing.x = NULL,
legend.spacing.y = NULL,
legend.margin = ggplot2::margin(0.2, 0.2, 0.2, 0.2, "cm"),
legend.key = ggplot2::element_rect(fill = "grey95", colour = "white"),
legend.key.size = ggplot2::unit(0.25, "cm"),
legend.key.height = NULL,
legend.key.width = NULL,
legend.text = ggplot2::element_text(size = rel(0.8)),
legend.text.align = NULL,
legend.title = ggplot2::element_text(hjust = 0),
legend.title.align = 0.5,
legend.position = "right",
legend.direction = NULL,
legend.justification = "center",
legend.box = NULL,
legend.box.margin = ggplot2::margin(1.5, 1.5, 1.5, 1.5),
legend.box.background = ggplot2::element_blank(),
legend.box.spacing = ggplot2::unit(0.4, "cm"),
panel.background = ggplot2::element_rect(fill = NA, colour = NA),
panel.border = ggplot2::element_blank(),
panel.grid = ggplot2::element_blank(),
panel.grid.minor = ggplot2::element_blank(),
panel.spacing = ggplot2::unit(half_line, "pt"),
panel.spacing.x = NULL,
panel.spacing.y = NULL,
panel.ontop = FALSE,
strip.background = ggplot2::element_rect(colour = NA, fill = NA),
strip.text = ggplot2::element_text(face = 'bold', colour = "black", size = ggplot2::rel(0.8), margin = ggplot2::margin(half_line, half_line, half_line, half_line)),
strip.text.x = NULL,
strip.text.y = ggplot2::element_text(angle = -90),
strip.placement = "outside",
strip.placement.x = NULL,
strip.placement.y = NULL,
strip.switch.pad.grid = ggplot2::unit(0.1, "cm"),
strip.switch.pad.wrap = ggplot2::unit(0.1, "cm"),
plot.background = ggplot2::element_blank(), #element_rect(colour = "white")
plot.title = ggplot2::element_text(size = ggplot2::rel(1.2), hjust = 0, vjust = 1, margin = ggplot2::margin(b = half_line * 1.2)),
plot.subtitle = ggplot2::element_text(size = ggplot2::rel(0.9), hjust = 0, vjust = 1, margin = ggplot2::margin(b = half_line * 0.9)),
plot.caption = ggplot2::element_text(size = ggplot2::rel(0.9), hjust = 1, vjust = 1, margin = ggplot2::margin(t = half_line * 0.9)),
# plot.tag = ggplot2::element_text(size = ggplot2::rel(1.3), hjust = 0.5, vjust = 0.5),
# plot.tag.position = "topleft",
plot.margin = ggplot2::margin(half_line, half_line, half_line, half_line),
complete = TRUE)
}
#' Theme function for plotting presentation-ready figures
#' @export
#'
slides_theme <- function() {
paper_theme(base_size = 24, base_line_size = 1.5)
}
#' Theme function for plotting presentation-ready figures with tilted axes
#' @export
#'
slides_theme_tilted <- function() {
paper_theme_tilted(base_size = 24, base_line_size = 1.5)
}
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