Description Usage Arguments Value
Function to process Fecal IgA Elisa data
1 2 3 | IgAAnalysis(plate_reader_file, mapping_file, shiny = FALSE, type = NULL,
print = FALSE, upper_asymptote = 0.9, growth_rate = 0.5, max_time = 1,
...)
|
plate_reader_file |
the file path of the plate reader file (in .csv or .xls(x) format) |
mapping_file |
mapping file for plate (for wells with standards, Type must be 'Standard') |
shiny |
OPTIONAL: necessary for running with shiny app interface since filenames are not the same. |
type |
OPTIONAL: necessary for running with shiny app, must specify file type |
print |
OPTIONAL: whether or not to save a copy of the standards curve to the working directory |
upper_asymptote |
a in the equation: a/(1 + exp(-b * (x-c))) (starting conditions for nls fit) |
growth_rate |
b in the equation: a/(1 + exp(-b * (x-c))) (starting conditions for nls fit) |
max_time |
c in the equation: a/(1 + exp(-b * (x-c))) (starting conditions for nls fit) |
... |
optional inputs |
list containing a table of the standards, and the information for the standard curve
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