convert_to_phyloseq: Function to convert sequencing object to phyloseq object with...
In econtijoch/Biomass-Workflow: Microbial Density Data Generation and Analysis Tools
Description
Usage
Arguments
Value
Description
Function to convert sequencing object to phyloseq object with optional addition of phylogenetic tree and taxonomy data
Usage
1
convert_to_phyloseq(sequencing_object, treefile = NULL, taxonomy = NULL)
Arguments
sequencing_object
output of individual_scale function (will contian sample metadata)
treefile
(optional) greengenes taxonomic tree file
taxonomy
(optional) greengenes taxonomic information file
Value
phyloseq object with provided data
econtijoch/Biomass-Workflow documentation built on May 15, 2019, 7:59 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Function to convert sequencing object to phyloseq object with optional addition of phylogenetic tree and taxonomy data
Usage
1 | convert_to_phyloseq(sequencing_object, treefile = NULL, taxonomy = NULL)
|
Arguments
sequencing_object |
output of individual_scale function (will contian sample metadata) |
treefile |
(optional) greengenes taxonomic tree file |
taxonomy |
(optional) greengenes taxonomic information file |
Value
phyloseq object with provided data
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.