Description Usage Arguments Value
Sequencing Analysis Wrapper
1 2 | sequencing_analysis_wrapper(biom_file, metadata_file, taxonomy_file, tree_file,
method = "PCoA", distance = "unifrac", n_axes = 10)
|
biom_file |
otu table in biom format |
metadata_file |
mapping file (QIIME-ready) |
taxonomy_file |
file that contains taxonomy (e.g. greengenes) |
tree_file |
taxonomic tree information (e.g. greengenes) |
method |
dimensionality reduction method (e.g. PCoA, NMDS, DCA) |
distance |
distance metric to use (e.g. unifrac, bray, jaccard) |
n_axes |
number of axes to get from PCoA |
list containing individual components of analyzed data ready for plotting, etc.
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