sequencing_data_plotter: Make abundance bar plots of sequencing data

In econtijoch/Biomass-Workflow: Microbial Density Data Generation and Analysis Tools

Description

Make abundance bar plots of sequencing data

Usage

sequencing_data_plotter(sequencing_object, depth = "Phylum",
  x.var = "X.SampleID", abundance = "relative", wrap.groups = NULL,
  x.groups = NULL, y.groups = NULL, facet.scales = "free",
  facet.space = "free", colors = NULL, tilt.axis = T, x.axis.factor = F)

Arguments

sequencing_object	sequencing object (e.g. result of individual_scale)
depth	taxonomic depth to plot
x.var	variable for x axis
abundance	relative or absolute
wrap.groups	grouping variable to facet_wrap
x.groups	grouping variable for faceting along x axis
y.groups	grouping variable for faceting along y axis
facet.scales	scales for facets (e.g. free)
facet.space	space for facets (e.g. free)
colors	colors to use for bars
tilt.axis	tilt x axis?
x.axis.factor	Make x axis variable factor?

Value

ggplot object

econtijoch/Biomass-Workflow documentation built on May 15, 2019, 7:59 p.m.