filterCells: Quality control.

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Quality control.

Description

Filter out cells based on variables provided in the parameter variables.

Usage

filterCells(
  object,
  assay.type = "RNA",
  variables,
  thresholds.low,
  thresholds.high
)

Arguments

object	CellRouter object.
assay.type	character; the type of data to use.
variables	character list; column names in assay@sampTab of the variables the cells will be filtered on, such as number of detected genes or mitochondrial content.
thresholds.low	numeric vector; cells with values lower than the ones provided here are filtered out.
thresholds.high	numeric vector; cells with values higher than the ones provided here are filtered out.

Value

CellRouter object with the rawdata, ndata, and sampTab slots updated.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.