getIndexes: Create heatmaps with gene signatures.

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Create heatmaps with gene signatures.

Description

Helper function to create heatmaps with gene signatures. Find the indexes to divide the data frame cells according to their subtype and gene signatures. Helper function of plotSignaturesHeatmaps.

Helper function to create heatmaps with gene signatures. Find the indexes to divide the data frame cells according to their subtype and gene signatures. Helper function of plotSignaturesHeatmaps.

Usage

getIndexes(ann_col, ann_row, order.columns, order.rows)

getIndexes(ann_col, ann_row, order.columns, order.rows)

Arguments

ann_col	data frame; column annotations of cells and populations.
ann_row	data frame; row annotations of genes and populations.
order.columns	character vector; order of columns.
order.rows	character vector; order of rows.

Value

list; colsep = ref_seps, rowsep = ref_seps_c.

list; colsep = ref_seps, rowsep = ref_seps_c.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.