globalGRN: Create global gene regulatory network.

View source: R/buildGRN_method.R

globalGRNR Documentation

Create global gene regulatory network.

Description

Helper function of buildGRN.

Usage

globalGRN(expr, tfs, threshold, blocksize)

Arguments

expr

dgCMatrix; gene expression in each cell, found in CellRouter@ndata.

tfs

character vector; transcription factors.

threshold

numeric; zscore threshold to identify regulatory interactions.

blocksize

numeric; size of the blocks in which genes will be scaled.


edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.