ig_tabToIgraph: Create an igraph object for the gene regulatory network.

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Create an igraph object for the gene regulatory network.

Description

Helper function of buildGRN.

Usage

ig_tabToIgraph(grnTab, simplify = FALSE, directed = FALSE, weights = TRUE)

Arguments

grnTab	matrix; table containing gene regulatory relationships. Table of TF, TF, maybe zscores, maybe correlations.
simplify	boolean; simplify the graph. For example, remove loops.
directed	boolean; create a directed or undirected graph.
weights	boolean; add gene correlations as weights of the graph.

Value

iGraph object.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.