pathsinfo: Helper function of processTrajectories.

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Helper function of processTrajectories.

Description

Get information about the paths between populations.

Usage

pathsinfo(
  object,
  assay.type = "RNA",
  num.cells,
  neighs,
  column.ann = "community",
  column.color = "colors"
)

Arguments

object	CellRouter object.
assay.type	character; the type of data to use.
num.cells	numeric; number of cells.
neighs	numeric; neighs.
column.ann	character; column corresponding to the population.
column.color	character; column corresponding to the color.

Value

list; list with distr, path, pathInfo, pseudotime for each path, and path_data.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.