pathwaycluster-methods: Plot pathway enrichment analysis heatmap.

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Plot pathway enrichment analysis heatmap.

Description

Plot pathway enrichment analysis heatmap and save to file.

Usage

pathwaycluster(object, pathway, numpathways = 5, logTransform)

## S4 method for signature 'CellRouter'
pathwaycluster(object, pathway, numpathways = 5, logTransform)

Arguments

object	CellRouter object.
pathway	the pathway database: GO, Reactome.
numpathways	numeric; number of pathways to show for each trajectory.
logTransform	boolean; whether to log-transform the p-values.

Value

list; the pathway data frame and the plot.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.