plotIntegration: Plot spatial clusters

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Plot spatial clusters

Description

Plot clusters in tissue image.

Usage

plotIntegration(
  object,
  assay.type = "RNA",
  sample.name = "Sample1",
  cluster.column,
  colors.column,
  library.column,
  libraries
)

Arguments

object	the CellRouter object.
assay.type	character; the type of data to use.
sample.name	character; the name of the tissue sample.
cluster.column	character; the name of the column where the clustering information is stored.
colors.column	character; the name of the column where the color of each cluster is stored.
library.column	character; the name of the column where the library information is stored.
libraries	character; the selected library.

Value

ggplot2; the plots for all libraries.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.