plotPathHeatmap-methods: Plot path heatmap.

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Plot path heatmap.

Description

Plot heatmap for specified genes in the trajectories and save plots to directory.

Usage

plotPathHeatmap(
  object,
  assay.type = "RNA",
  paths,
  genelist,
  cluster.column = "population",
  color.column = "colors",
  threshold = 2
)

## S4 method for signature 'CellRouter'
plotPathHeatmap(
  object,
  assay.type = "RNA",
  paths,
  genelist,
  cluster.column = "population",
  color.column = "colors",
  threshold = 2
)

Arguments

object	CellRouter object.
assay.type	character; the type of data to use.
paths	character vector; selected trajectories.
genelist	character vector; genes to show.
cluster.column	character; the name of the column where the clustering information is stored.
color.column	character; the name of the column where the color information is stored.
threshold	numeric; threshold to rescale gene expression.

Value

list; ggplot2 plots.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.