plotSelectedClusters: Plot selected spatial clusters

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Plot selected spatial clusters

Description

Plot selected clusters in tissue image.

Usage

plotSelectedClusters(
  object,
  assay.type = "ST",
  sample.name = "Sample1",
  cluster.column = "population",
  colors.column = "colors",
  selected_clusters,
  facets = FALSE,
  annotate_centroids = FALSE,
  num.cols = 2,
  point.size = 1.75,
  title = NULL
)

Arguments

object	the CellRouter object.
assay.type	character; the type of data to use.
sample.name	character; the name of the tissue sample.
cluster.column	character; the name of the column where the clustering information is stored.
colors.column	character; the name of the column where the color of each cluster is stored.
selected_clusters	list; a vector containing the name of the clusters that will be plotted for each tissue sample.
facets	boolean; plot selected clusters in different facets.
annotate_centroids	boolean; annotate the cluster centroids.
num.cols	numeric; the number of columns in the output figure.
point.size	numeric; the size of the spot in the image.
title	character; figure title.

Value

ggplot2; plot.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.