plotSignatureScoreDynamics-methods: Plot signature scores along a trajectory.

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Plot signature scores along a trajectory.

Description

Create trajectory signature scores plot.

Usage

plotSignatureScoreDynamics(
  object,
  assay.type = "RNA",
  trajectories,
  geneList,
  rescale,
  order = 1
)

## S4 method for signature 'CellRouter'
plotSignatureScoreDynamics(
  object,
  assay.type = "RNA",
  trajectories,
  geneList,
  rescale,
  order = 1
)

Arguments

object	CellRouter object.
assay.type	character; the type of data to use.
trajectories	character vector; selected trajectories.
geneList	character vector; genes to show.
rescale	boolean; whether to rescale curves simultaneously or individually.
order	numeric; integer giving the order of the neighborhood.

Value

ggplot2 graph.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.