plotSpatialScore-methods: Plot spatial expression

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Plot spatial expression

Description

Plot spatial expression for selected genes.

Usage

plotSpatialScore(
  object,
  assay.type = "ST",
  sample.name = "Sample1",
  cluster.column = "population",
  selected_clusters = NULL,
  genelist,
  point.size = 1.75
)

## S4 method for signature 'CellRouter'
plotSpatialScore(
  object,
  assay.type = "ST",
  sample.name = "Sample1",
  cluster.column = "population",
  selected_clusters = NULL,
  genelist,
  point.size = 1.75
)

Arguments

object	the CellRouter object.
assay.type	character; the type of data to use.
sample.name	character; the name of the tissue sample.
cluster.column	character; the name of the column where the clustering information is stored.
selected_clusters	list; a vector containing the name of the clusters that will be plotted for each tissue sample.
genelist	character vector; genes to show.
point.size	numeric; the size of the spot in the image.

Value

list; ggplot2 plots.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.