plotSpatialSubclusters: Plot subclusters

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Plot subclusters

Description

Plot subclusters from selected clusters.

Usage

plotSpatialSubclusters(
  object,
  assay.type = "ST",
  sample.name = "Sample1",
  cluster.column = "population",
  subcluster.column = "Subpopulation",
  selected_clusters,
  annotate_centroids = FALSE,
  point.size = 1.75,
  title = NULL
)

Arguments

object	the CellRouter object.
assay.type	character; the type of data to use.
sample.name	character; the name of the tissue sample.
cluster.column	character; the name of the column where the clustering information is stored.
subcluster.column	character; the name of the column where the subclustering information is stored.
selected_clusters	list; a vector containing the name of the clusters that will be plotted for each tissue sample.
annotate_centroids	boolean; annotate the subcluster centroids.
point.size	numeric; the size of the spot in the image.
title	character; figure title.

Value

ggplot2; plot.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.