plotViolin: Plot violin plot.

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Plot violin plot.

Description

Plot violin plot of gene expression in the populations and save to file.

Usage

plotViolin(
  object,
  assay.type = "RNA",
  geneList,
  column,
  column.color,
  cols,
  order = NULL,
  log = TRUE
)

Arguments

object	CellRouter object.
assay.type	character; the type of data to use.
geneList	character vector; genes to show.
column	character; column in the metadata table to annotate the figure.
column.color	character; corresponding color column for the annotation.
cols	numeric; the number of columns in the output figure.
order	character vector; ordered populations. The default is ascending order.
log	boolean; whether to use data in logarithmic scale.

Value

ggplot2; plot.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.