population.pairing: Compute cell-cell interaction network.
In edroaldo/fusca: Framework for Unified Single-Cell Analysis

population.pairing

R Documentation

Compute cell-cell interaction network.

Analyze the mean expression data generated by the computeValue method of CellRouter to determine co-expression patterns of ligands and receptors.

population.pairing(mean.expr, ligands, receptors, threshold, pairs)

`mean.expr`	list; the statistics of the expressed genes as calculated by the computeValue method of CellRouter.
`ligands`	vector; list of genes annotated as ligands.
`receptors`	vector; list of genes annotated as receptors.
`threshold`	numeric; threshold to select the genes in the population according to their mean expression.
`pairs`	the pairs;