predictCellInteractions: Predict Cell Interactions

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Predict Cell Interactions

Description

Plot graphs of the ligands and receptors, their distances and scores.

Usage

predictCellInteractions(
  object,
  assay.type = "RNA",
  sample.name = "Sample1",
  cluster.type = "Cluster",
  graph,
  distance.threshold = 0.75
)

Arguments

object	the CellRouter object.
assay.type	character; the type of data to use.
sample.name	character; the name of the tissue sample.
cluster.type	character; the column where the clusters are indicated. It could be either 'Cluster' or 'Subcluster'. Used to locate the distance matrix in the CellRouter object.
graph	igraph; the cell graph.
distance.threshold	numeric; the threshold for the distance.

Value

list of ggplot2 graphs.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.